Hb_001040_160

Information

Type -
Description -
Location Contig1040: 210838-215123
Sequence    

Annotation

kegg
ID rcu:RCOM_0936190
description glutaredoxin, grx, putative
nr
ID XP_002519053.1
description glutaredoxin, grx, putative [Ricinus communis]
swissprot
ID Q9ZPH2
description Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=1 SV=1
trembl
ID B9RZ84
description Glutaredoxin, grx, putative OS=Ricinus communis GN=RCOM_0936190 PE=4 SV=1
Gene Ontology
ID GO:0005829
description monothiol glutaredoxin-s17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01474: 210923-215037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_160 0.0 - - glutaredoxin, grx, putative [Ricinus communis]
2 Hb_000316_030 0.0625345454 - - zinc finger protein, putative [Ricinus communis]
3 Hb_008714_020 0.0668041703 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
4 Hb_001609_010 0.0704867607 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
5 Hb_063047_010 0.0705276474 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
6 Hb_005635_010 0.0737081937 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
7 Hb_025012_010 0.0758507156 - - PREDICTED: importin-4 [Vitis vinifera]
8 Hb_000568_040 0.0778050723 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
9 Hb_000390_060 0.0800577906 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
10 Hb_027028_020 0.0833114667 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
11 Hb_110364_010 0.0835719408 - - gamma-tubulin complex component, putative [Ricinus communis]
12 Hb_000046_450 0.0836127915 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
13 Hb_001019_170 0.083621618 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
14 Hb_001307_140 0.083893735 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
15 Hb_000370_030 0.0852395479 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
16 Hb_010180_040 0.0856867189 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
17 Hb_002067_150 0.0879872619 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
18 Hb_001943_010 0.0884430833 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
19 Hb_003434_060 0.089036647 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
20 Hb_001871_040 0.0894253867 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001040_160 Hb_001040_160 Hb_000316_030 Hb_000316_030 Hb_001040_160--Hb_000316_030 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_001609_010 Hb_001609_010 Hb_001040_160--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_001040_160--Hb_063047_010 Hb_005635_010 Hb_005635_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_003434_060 Hb_003434_060 Hb_000316_030--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000316_030--Hb_000390_060 Hb_000316_030--Hb_001609_010 Hb_000316_030--Hb_063047_010 Hb_002097_090 Hb_002097_090 Hb_000316_030--Hb_002097_090 Hb_001019_170 Hb_001019_170 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_000046_450 Hb_000046_450 Hb_008714_020--Hb_000046_450 Hb_001609_010--Hb_063047_010 Hb_001871_040 Hb_001871_040 Hb_001609_010--Hb_001871_040 Hb_004881_050 Hb_004881_050 Hb_001609_010--Hb_004881_050 Hb_000457_060 Hb_000457_060 Hb_001609_010--Hb_000457_060 Hb_063047_010--Hb_001871_040 Hb_110364_010 Hb_110364_010 Hb_063047_010--Hb_110364_010 Hb_063047_010--Hb_004881_050 Hb_000814_090 Hb_000814_090 Hb_005635_010--Hb_000814_090 Hb_005295_040 Hb_005295_040 Hb_005635_010--Hb_005295_040 Hb_002725_070 Hb_002725_070 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090 Hb_000078_100 Hb_000078_100 Hb_005635_010--Hb_000078_100 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_000347_130 Hb_000347_130 Hb_025012_010--Hb_000347_130 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
144.606 87.9492 22.6081 69.9096 160.207 284.185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.117 48.6367 99.0339 74.7655 40.0653

CAGE analysis