Hb_001040_200

Information

Type -
Description -
Location Contig1040: 242830-243549
Sequence    

Annotation

kegg
ID rcu:RCOM_0936330
description rnf5, putative
nr
ID XP_012091596.1
description PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
swissprot
ID Q6R567
description E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1
trembl
ID A0A067JDX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21434 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rma1h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01481: 242702-246408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_200 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
2 Hb_000594_160 0.0885180403 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
3 Hb_022250_160 0.0892401884 - - respiratory burst oxidase A [Manihot esculenta]
4 Hb_007386_030 0.0945105496 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
5 Hb_004282_010 0.1035536784 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
6 Hb_004079_100 0.1037378991 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
7 Hb_002448_020 0.1068467801 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_005731_070 0.1072663091 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006501_100 0.1080420624 - - malic enzyme, putative [Ricinus communis]
10 Hb_001568_010 0.1088907081 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005766_010 0.1098032148 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_003847_050 0.1105726613 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
13 Hb_007875_020 0.1118719771 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
14 Hb_000112_050 0.1118916503 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
15 Hb_000014_080 0.1127673217 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
16 Hb_005144_080 0.1167832877 - - Serine carboxypeptidase, putative [Ricinus communis]
17 Hb_019026_050 0.1186302809 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001114_120 0.1202585295 - - protein with unknown function [Ricinus communis]
19 Hb_000956_070 0.1212093625 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
20 Hb_029510_090 0.1228656093 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]

Gene co-expression network

sample Hb_001040_200 Hb_001040_200 Hb_000594_160 Hb_000594_160 Hb_001040_200--Hb_000594_160 Hb_022250_160 Hb_022250_160 Hb_001040_200--Hb_022250_160 Hb_007386_030 Hb_007386_030 Hb_001040_200--Hb_007386_030 Hb_004282_010 Hb_004282_010 Hb_001040_200--Hb_004282_010 Hb_004079_100 Hb_004079_100 Hb_001040_200--Hb_004079_100 Hb_002448_020 Hb_002448_020 Hb_001040_200--Hb_002448_020 Hb_005766_010 Hb_005766_010 Hb_000594_160--Hb_005766_010 Hb_000594_160--Hb_007386_030 Hb_005731_070 Hb_005731_070 Hb_000594_160--Hb_005731_070 Hb_000594_160--Hb_004079_100 Hb_000866_190 Hb_000866_190 Hb_000594_160--Hb_000866_190 Hb_022250_160--Hb_004079_100 Hb_007416_290 Hb_007416_290 Hb_022250_160--Hb_007416_290 Hb_022250_160--Hb_007386_030 Hb_008566_080 Hb_008566_080 Hb_022250_160--Hb_008566_080 Hb_022250_160--Hb_000594_160 Hb_007875_020 Hb_007875_020 Hb_007386_030--Hb_007875_020 Hb_007386_030--Hb_005731_070 Hb_065521_010 Hb_065521_010 Hb_007386_030--Hb_065521_010 Hb_007386_030--Hb_008566_080 Hb_000956_070 Hb_000956_070 Hb_004282_010--Hb_000956_070 Hb_006501_100 Hb_006501_100 Hb_004282_010--Hb_006501_100 Hb_000014_080 Hb_000014_080 Hb_004282_010--Hb_000014_080 Hb_008727_040 Hb_008727_040 Hb_004282_010--Hb_008727_040 Hb_001568_010 Hb_001568_010 Hb_004282_010--Hb_001568_010 Hb_006277_030 Hb_006277_030 Hb_004282_010--Hb_006277_030 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_006846_030 Hb_006846_030 Hb_002448_020--Hb_006846_030 Hb_002448_020--Hb_065521_010 Hb_002448_020--Hb_007386_030 Hb_003847_050 Hb_003847_050 Hb_002448_020--Hb_003847_050 Hb_002448_020--Hb_007875_020 Hb_001114_120 Hb_001114_120 Hb_002448_020--Hb_001114_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.219893 9.4831 19.8454 37.6288 0.226006 0.71636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155622 0.183519 0.437985 44.0763 17.2386

CAGE analysis