Hb_001045_050

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1045: 64949-67045
Sequence    

Annotation

kegg
ID pop:POPTR_0001s33560g
description POPTRDRAFT_174550; hypothetical protein
nr
ID XP_002300120.2
description hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
swissprot
ID Q9FYA2
description Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1
trembl
ID B9GF44
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s33560g PE=4 SV=2
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 75

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01583: 64961-65165 , PASA_asmbl_01584: 65203-66858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001045_050 0.0 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
2 Hb_000140_160 0.1394029077 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
3 Hb_001101_030 0.1971551604 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
4 Hb_002006_140 0.1981596153 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
5 Hb_003435_060 0.2022481062 - - carbonic anhydrase, putative [Ricinus communis]
6 Hb_000500_110 0.207619307 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_000597_110 0.2169403226 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
8 Hb_024621_030 0.2216453477 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
9 Hb_032631_010 0.221720971 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
10 Hb_000220_160 0.2225510731 - - hypothetical protein B456_003G184800 [Gossypium raimondii]
11 Hb_132880_030 0.2249097337 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
12 Hb_006478_180 0.2270045486 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
13 Hb_008014_030 0.2282611057 - - Aquaporin NIP1.1, putative [Ricinus communis]
14 Hb_112082_030 0.2341165192 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_000256_100 0.2343962954 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
16 Hb_000699_170 0.2377882177 - - myosin XI, putative [Ricinus communis]
17 Hb_000007_110 0.2382433568 - - PREDICTED: peroxidase 11 [Jatropha curcas]
18 Hb_000926_130 0.2399879974 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_027445_090 0.2416945416 - - oleosin 18.2 kDa-like [Jatropha curcas]
20 Hb_004855_050 0.2421946305 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]

Gene co-expression network

sample Hb_001045_050 Hb_001045_050 Hb_000140_160 Hb_000140_160 Hb_001045_050--Hb_000140_160 Hb_001101_030 Hb_001101_030 Hb_001045_050--Hb_001101_030 Hb_002006_140 Hb_002006_140 Hb_001045_050--Hb_002006_140 Hb_003435_060 Hb_003435_060 Hb_001045_050--Hb_003435_060 Hb_000500_110 Hb_000500_110 Hb_001045_050--Hb_000500_110 Hb_000597_110 Hb_000597_110 Hb_001045_050--Hb_000597_110 Hb_027445_090 Hb_027445_090 Hb_000140_160--Hb_027445_090 Hb_000256_100 Hb_000256_100 Hb_000140_160--Hb_000256_100 Hb_000140_160--Hb_000500_110 Hb_001190_060 Hb_001190_060 Hb_000140_160--Hb_001190_060 Hb_000007_110 Hb_000007_110 Hb_000140_160--Hb_000007_110 Hb_004855_050 Hb_004855_050 Hb_001101_030--Hb_004855_050 Hb_001101_030--Hb_000256_100 Hb_009230_040 Hb_009230_040 Hb_001101_030--Hb_009230_040 Hb_000152_810 Hb_000152_810 Hb_001101_030--Hb_000152_810 Hb_002498_040 Hb_002498_040 Hb_001101_030--Hb_002498_040 Hb_003428_100 Hb_003428_100 Hb_002006_140--Hb_003428_100 Hb_112082_030 Hb_112082_030 Hb_002006_140--Hb_112082_030 Hb_001250_140 Hb_001250_140 Hb_002006_140--Hb_001250_140 Hb_002311_240 Hb_002311_240 Hb_002006_140--Hb_002311_240 Hb_005389_190 Hb_005389_190 Hb_002006_140--Hb_005389_190 Hb_008014_030 Hb_008014_030 Hb_003435_060--Hb_008014_030 Hb_000300_130 Hb_000300_130 Hb_003435_060--Hb_000300_130 Hb_024621_030 Hb_024621_030 Hb_003435_060--Hb_024621_030 Hb_003106_120 Hb_003106_120 Hb_003435_060--Hb_003106_120 Hb_001720_060 Hb_001720_060 Hb_003435_060--Hb_001720_060 Hb_003057_080 Hb_003057_080 Hb_000500_110--Hb_003057_080 Hb_030291_030 Hb_030291_030 Hb_000500_110--Hb_030291_030 Hb_000926_130 Hb_000926_130 Hb_000500_110--Hb_000926_130 Hb_000045_230 Hb_000045_230 Hb_000500_110--Hb_000045_230 Hb_007072_020 Hb_007072_020 Hb_000500_110--Hb_007072_020 Hb_032631_010 Hb_032631_010 Hb_000597_110--Hb_032631_010 Hb_001952_110 Hb_001952_110 Hb_000597_110--Hb_001952_110 Hb_000220_160 Hb_000220_160 Hb_000597_110--Hb_000220_160 Hb_001951_090 Hb_001951_090 Hb_000597_110--Hb_001951_090 Hb_003677_010 Hb_003677_010 Hb_000597_110--Hb_003677_010 Hb_132880_030 Hb_132880_030 Hb_000597_110--Hb_132880_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0264459 9.76467 2.62863 1.17219 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.364421 11.2719 2.69697 61.3551 0.193208

CAGE analysis