Hb_001045_080

Information

Type -
Description -
Location Contig1045: 99929-105652
Sequence    

Annotation

kegg
ID rcu:RCOM_0466810
description hypothetical protein
nr
ID XP_012088009.1
description PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SPY6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0466810 PE=4 SV=1
Gene Ontology
ID GO:0005747
description PREDICTED: uncharacterized protein LOC105646704

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01585: 99956-105535 , PASA_asmbl_01586: 102703-103110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001045_080 0.0 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
2 Hb_003125_150 0.0503915213 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
3 Hb_009851_100 0.0639013199 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
4 Hb_001268_140 0.0642844805 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000312_090 0.066210083 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
6 Hb_001269_270 0.0665189538 - - 60S ribosomal protein L27B [Hevea brasiliensis]
7 Hb_000046_260 0.0745898647 - - acyl carrier protein, putative [Ricinus communis]
8 Hb_002571_020 0.0772551778 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
9 Hb_000212_260 0.0796747608 - - acyl-carrier-protein [Triadica sebifera]
10 Hb_001080_080 0.0812994307 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
11 Hb_007575_070 0.0819753226 - - Histone H3.2 [Glycine soja]
12 Hb_000120_750 0.0822064828 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
13 Hb_000045_190 0.082524343 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
14 Hb_000617_090 0.0830117821 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
15 Hb_000099_060 0.0831379427 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
16 Hb_002835_320 0.0835673554 - - 60S ribosomal protein L27B [Hevea brasiliensis]
17 Hb_002431_050 0.0853847345 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
18 Hb_000526_150 0.0854665717 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
19 Hb_000134_330 0.0862229006 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
20 Hb_007944_040 0.0873568017 - - 60S ribosomal protein L18aB [Hevea brasiliensis]

Gene co-expression network

sample Hb_001045_080 Hb_001045_080 Hb_003125_150 Hb_003125_150 Hb_001045_080--Hb_003125_150 Hb_009851_100 Hb_009851_100 Hb_001045_080--Hb_009851_100 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_000312_090 Hb_000312_090 Hb_001045_080--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_003125_150--Hb_001269_270 Hb_003125_150--Hb_000312_090 Hb_003125_150--Hb_009851_100 Hb_007479_020 Hb_007479_020 Hb_003125_150--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_003125_150--Hb_000120_750 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_009851_100--Hb_000312_090 Hb_002835_320 Hb_002835_320 Hb_009851_100--Hb_002835_320 Hb_000526_150 Hb_000526_150 Hb_009851_100--Hb_000526_150 Hb_009851_100--Hb_001269_270 Hb_001300_270 Hb_001300_270 Hb_001268_140--Hb_001300_270 Hb_000134_330 Hb_000134_330 Hb_001268_140--Hb_000134_330 Hb_007944_040 Hb_007944_040 Hb_001268_140--Hb_007944_040 Hb_155764_020 Hb_155764_020 Hb_001268_140--Hb_155764_020 Hb_001268_140--Hb_001269_270 Hb_000617_090 Hb_000617_090 Hb_000312_090--Hb_000617_090 Hb_001221_310 Hb_001221_310 Hb_000312_090--Hb_001221_310 Hb_000312_090--Hb_002835_320 Hb_001638_260 Hb_001638_260 Hb_001269_270--Hb_001638_260 Hb_001269_270--Hb_000617_090 Hb_001269_270--Hb_000526_150 Hb_004116_080 Hb_004116_080 Hb_000046_260--Hb_004116_080 Hb_000046_260--Hb_000312_090 Hb_000045_190 Hb_000045_190 Hb_000046_260--Hb_000045_190 Hb_001687_040 Hb_001687_040 Hb_000046_260--Hb_001687_040 Hb_002214_050 Hb_002214_050 Hb_000046_260--Hb_002214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.6377 16.6785 28.4621 30.9872 39.9384 53.0231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
150.528 188.252 75.2502 29.2626 15.1166

CAGE analysis