Hb_001045_110

Information

Type transcription factor
Description TF Family: M-type
Location Contig1045: 143103-143597
Sequence    

Annotation

kegg
ID tcc:TCM_008716
description Flowering locus C, putative isoform 1
nr
ID AHF20809.1
description flowering locus C-like protein [Juglans regia]
swissprot
ID Q38837
description Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2
trembl
ID W0FFX1
description Flowering locus C-like protein OS=Juglans regia GN=FLC PE=2 SV=1
Gene Ontology
ID GO:0005634
description flowering locus c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01587: 143363-188114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001045_110 0.0 transcription factor TF Family: M-type flowering locus C-like protein [Juglans regia]
2 Hb_000144_040 0.2421440496 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
3 Hb_000115_010 0.2444410973 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
4 Hb_000450_150 0.2504330793 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
5 Hb_000820_050 0.2569202066 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
6 Hb_025311_020 0.2607194969 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
7 Hb_000820_060 0.263340791 - - -
8 Hb_004846_160 0.2714693172 - - -
9 Hb_006268_020 0.2732050957 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
10 Hb_001188_120 0.2931518811 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
11 Hb_052689_010 0.2949910483 - - heat shock cognate protein [Solanum commersonii]
12 Hb_001304_120 0.2987978435 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
13 Hb_181026_010 0.3009123278 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
14 Hb_000964_070 0.3020397963 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
15 Hb_012753_010 0.3041627735 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_018609_030 0.3044588586 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012098_190 0.3066292096 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
18 Hb_006816_470 0.3075795048 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
19 Hb_000173_440 0.3109395996 - - YALI0B05280p [Yarrowia lipolytica]
20 Hb_000327_370 0.3148876039 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001045_110 Hb_001045_110 Hb_000144_040 Hb_000144_040 Hb_001045_110--Hb_000144_040 Hb_000115_010 Hb_000115_010 Hb_001045_110--Hb_000115_010 Hb_000450_150 Hb_000450_150 Hb_001045_110--Hb_000450_150 Hb_000820_050 Hb_000820_050 Hb_001045_110--Hb_000820_050 Hb_025311_020 Hb_025311_020 Hb_001045_110--Hb_025311_020 Hb_000820_060 Hb_000820_060 Hb_001045_110--Hb_000820_060 Hb_001304_120 Hb_001304_120 Hb_000144_040--Hb_001304_120 Hb_001188_120 Hb_001188_120 Hb_000144_040--Hb_001188_120 Hb_076795_010 Hb_076795_010 Hb_000144_040--Hb_076795_010 Hb_012098_190 Hb_012098_190 Hb_000144_040--Hb_012098_190 Hb_056199_030 Hb_056199_030 Hb_000144_040--Hb_056199_030 Hb_000115_010--Hb_000820_050 Hb_000115_010--Hb_000820_060 Hb_000032_450 Hb_000032_450 Hb_000115_010--Hb_000032_450 Hb_000173_440 Hb_000173_440 Hb_000115_010--Hb_000173_440 Hb_006268_020 Hb_006268_020 Hb_000115_010--Hb_006268_020 Hb_001006_220 Hb_001006_220 Hb_000115_010--Hb_001006_220 Hb_000450_150--Hb_000173_440 Hb_000450_150--Hb_000115_010 Hb_000450_150--Hb_001006_220 Hb_000450_150--Hb_025311_020 Hb_000450_150--Hb_000820_050 Hb_000820_050--Hb_000820_060 Hb_105328_010 Hb_105328_010 Hb_000820_050--Hb_105328_010 Hb_000820_050--Hb_006268_020 Hb_000820_050--Hb_000032_450 Hb_006472_080 Hb_006472_080 Hb_000820_050--Hb_006472_080 Hb_009615_080 Hb_009615_080 Hb_025311_020--Hb_009615_080 Hb_012424_010 Hb_012424_010 Hb_025311_020--Hb_012424_010 Hb_025311_020--Hb_000820_060 Hb_000190_240 Hb_000190_240 Hb_025311_020--Hb_000190_240 Hb_000296_060 Hb_000296_060 Hb_025311_020--Hb_000296_060 Hb_000820_060--Hb_006472_080 Hb_000820_060--Hb_105328_010 Hb_000820_060--Hb_000032_450 Hb_000820_060--Hb_006268_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139252 0.436685 0.350381 1.57405 0.419838 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.501175 0 5.15009 2.60302 3.64664

CAGE analysis