Hb_001047_030

Information

Type -
Description -
Location Contig1047: 20932-25736
Sequence    

Annotation

kegg
ID pop:POPTR_0015s080101
description POPTRDRAFT_824631; hypothetical protein
nr
ID XP_012065190.1
description PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
swissprot
ID O64740
description Protein transport protein SEC13 homolog B OS=Arabidopsis thaliana GN=SEC13B PE=1 SV=1
trembl
ID A0A067LI06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20869 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein transport protein sec13 homolog b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01607: 21011-26025 , PASA_asmbl_01608: 21014-22138 , PASA_asmbl_01609: 23174-23586
cDNA
(Sanger)
(ID:Location)		 001_F09.ab1: 21014-21766 , 017_M20.ab1: 21011-25340 , 021_E15.ab1: 21014-21735 , 026_L03.ab1: 21014-21705 , 051_B08.ab1: 21072-25346

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_030 0.0 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
2 Hb_002400_470 0.0631995691 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_008864_110 0.0635783626 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
4 Hb_001301_200 0.066007169 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
5 Hb_007904_200 0.0692602228 - - protein binding protein, putative [Ricinus communis]
6 Hb_048937_040 0.0737210264 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
7 Hb_010457_030 0.0748920685 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
8 Hb_006951_020 0.0760755878 - - Rop3 [Hevea brasiliensis]
9 Hb_000123_090 0.0769150873 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
10 Hb_007059_010 0.0777063938 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
11 Hb_004102_140 0.0788142505 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004447_060 0.079396987 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
13 Hb_002200_130 0.0795410379 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
14 Hb_000173_510 0.0802516498 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
15 Hb_005532_050 0.0804364668 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
16 Hb_000538_100 0.0821541185 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000322_100 0.0825273602 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
18 Hb_000365_390 0.0828054018 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
19 Hb_000010_330 0.083251468 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
20 Hb_005170_040 0.0834293031 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_001047_030 Hb_001047_030 Hb_002400_470 Hb_002400_470 Hb_001047_030--Hb_002400_470 Hb_008864_110 Hb_008864_110 Hb_001047_030--Hb_008864_110 Hb_001301_200 Hb_001301_200 Hb_001047_030--Hb_001301_200 Hb_007904_200 Hb_007904_200 Hb_001047_030--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_001047_030--Hb_048937_040 Hb_010457_030 Hb_010457_030 Hb_001047_030--Hb_010457_030 Hb_002400_470--Hb_008864_110 Hb_057878_010 Hb_057878_010 Hb_002400_470--Hb_057878_010 Hb_000236_380 Hb_000236_380 Hb_002400_470--Hb_000236_380 Hb_000123_090 Hb_000123_090 Hb_002400_470--Hb_000123_090 Hb_005532_050 Hb_005532_050 Hb_002400_470--Hb_005532_050 Hb_003605_130 Hb_003605_130 Hb_008864_110--Hb_003605_130 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_008864_110--Hb_000123_090 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_007163_090 Hb_007163_090 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_001301_200--Hb_048937_040 Hb_000010_330 Hb_000010_330 Hb_007904_200--Hb_000010_330 Hb_007904_200--Hb_010457_030 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_048937_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_048937_040--Hb_004724_200 Hb_048937_040--Hb_000010_330 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_010457_030--Hb_000010_330 Hb_019280_040 Hb_019280_040 Hb_010457_030--Hb_019280_040 Hb_000365_390 Hb_000365_390 Hb_010457_030--Hb_000365_390 Hb_010457_030--Hb_003175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.753 62.6166 44.2708 86.2177 121.201 153.048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.1319 68.611 90.3486 52.2463 40.0012

CAGE analysis