Hb_001047_180

Information

Type -
Description -
Location Contig1047: 103858-106716
Sequence    

Annotation

kegg
ID rcu:RCOM_0557330
description hypothetical protein
nr
ID XP_002520725.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S406
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0557330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01624: 103820-106678
cDNA
(Sanger)
(ID:Location)		 012_C06.ab1: 103820-106678

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000146_030 0.0877505686 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
3 Hb_002411_100 0.0890386518 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
4 Hb_010557_010 0.1007487534 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
5 Hb_006583_030 0.1011517452 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
6 Hb_000703_070 0.1042404991 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
7 Hb_004007_170 0.1109012441 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_004459_060 0.1119523636 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
9 Hb_003948_020 0.1158860591 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
10 Hb_003470_100 0.116398648 - - protein binding protein, putative [Ricinus communis]
11 Hb_005488_160 0.1165880576 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
12 Hb_001999_260 0.1186559607 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
13 Hb_000544_080 0.1196160402 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
14 Hb_003549_140 0.1200532938 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_009545_070 0.1216722297 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
16 Hb_000045_050 0.1229328666 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
17 Hb_000402_020 0.1231108096 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_006130_020 0.1244731539 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
19 Hb_004117_150 0.1246992385 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
20 Hb_004208_090 0.1250715697 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]

Gene co-expression network

sample Hb_001047_180 Hb_001047_180 Hb_000146_030 Hb_000146_030 Hb_001047_180--Hb_000146_030 Hb_002411_100 Hb_002411_100 Hb_001047_180--Hb_002411_100 Hb_010557_010 Hb_010557_010 Hb_001047_180--Hb_010557_010 Hb_006583_030 Hb_006583_030 Hb_001047_180--Hb_006583_030 Hb_000703_070 Hb_000703_070 Hb_001047_180--Hb_000703_070 Hb_004007_170 Hb_004007_170 Hb_001047_180--Hb_004007_170 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_002411_100--Hb_010557_010 Hb_002411_100--Hb_000703_070 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_002811_250 Hb_002811_250 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_006681_020 Hb_006681_020 Hb_006583_030--Hb_006681_020 Hb_001999_260 Hb_001999_260 Hb_006583_030--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006583_030--Hb_004855_070 Hb_000302_230 Hb_000302_230 Hb_006583_030--Hb_000302_230 Hb_006583_030--Hb_010557_010 Hb_027298_020 Hb_027298_020 Hb_000703_070--Hb_027298_020 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_000703_070--Hb_002811_250 Hb_002232_380 Hb_002232_380 Hb_000703_070--Hb_002232_380 Hb_003470_100 Hb_003470_100 Hb_004007_170--Hb_003470_100 Hb_004007_170--Hb_004117_150 Hb_004007_170--Hb_006681_020 Hb_004007_170--Hb_004855_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40592 4.64015 46.3481 13.1014 2.20981 4.66434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.69194 4.74914 2.22946 2.12265 38.0976

CAGE analysis