Hb_001047_200

Information

Type -
Description -
Location Contig1047: 110552-113870
Sequence    

Annotation

kegg
ID egr:104426662
description pre-mRNA-splicing factor 18
nr
ID XP_010038093.1
description PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
swissprot
ID Q99633
description Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRPF18 PE=1 SV=1
trembl
ID A0A059A7V8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03365 PE=4 SV=1
Gene Ontology
ID GO:0005681
description pre-mrna-splicing factor 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01625: 110825-113287 , PASA_asmbl_01626: 111425-112133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_200 0.0 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
2 Hb_000577_030 0.0518149659 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
3 Hb_000823_030 0.0549841637 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
4 Hb_000236_470 0.0604542765 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
5 Hb_000184_150 0.0652617673 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
6 Hb_001021_200 0.0737357682 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
7 Hb_005542_050 0.0740009504 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
8 Hb_002571_030 0.0746424864 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
9 Hb_000023_320 0.0748456599 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000917_160 0.0778173561 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
11 Hb_000926_010 0.0781712951 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
12 Hb_006618_090 0.0784184019 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
13 Hb_120803_010 0.0785887168 - - PREDICTED: protein kinase and PP2C-like domain-containing protein [Malus domestica]
14 Hb_029695_020 0.0789109397 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
15 Hb_003943_020 0.0794871369 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
16 Hb_118840_050 0.0795956655 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
17 Hb_000556_170 0.0795960019 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
18 Hb_001277_020 0.0803905596 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
19 Hb_001171_030 0.0803970019 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
20 Hb_128548_010 0.0804126121 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001047_200 Hb_001047_200 Hb_000577_030 Hb_000577_030 Hb_001047_200--Hb_000577_030 Hb_000823_030 Hb_000823_030 Hb_001047_200--Hb_000823_030 Hb_000236_470 Hb_000236_470 Hb_001047_200--Hb_000236_470 Hb_000184_150 Hb_000184_150 Hb_001047_200--Hb_000184_150 Hb_001021_200 Hb_001021_200 Hb_001047_200--Hb_001021_200 Hb_005542_050 Hb_005542_050 Hb_001047_200--Hb_005542_050 Hb_000577_030--Hb_001021_200 Hb_000577_030--Hb_000184_150 Hb_000917_160 Hb_000917_160 Hb_000577_030--Hb_000917_160 Hb_032920_130 Hb_032920_130 Hb_000577_030--Hb_032920_130 Hb_118840_050 Hb_118840_050 Hb_000577_030--Hb_118840_050 Hb_003142_040 Hb_003142_040 Hb_000823_030--Hb_003142_040 Hb_088144_020 Hb_088144_020 Hb_000823_030--Hb_088144_020 Hb_007426_060 Hb_007426_060 Hb_000823_030--Hb_007426_060 Hb_000823_030--Hb_000184_150 Hb_001171_030 Hb_001171_030 Hb_000823_030--Hb_001171_030 Hb_001277_020 Hb_001277_020 Hb_000236_470--Hb_001277_020 Hb_000640_310 Hb_000640_310 Hb_000236_470--Hb_000640_310 Hb_002701_150 Hb_002701_150 Hb_000236_470--Hb_002701_150 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_000556_170 Hb_000556_170 Hb_000236_470--Hb_000556_170 Hb_001723_140 Hb_001723_140 Hb_000184_150--Hb_001723_140 Hb_000184_150--Hb_000917_160 Hb_006618_090 Hb_006618_090 Hb_000184_150--Hb_006618_090 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_002022_070 Hb_002022_070 Hb_001021_200--Hb_002022_070 Hb_005104_010 Hb_005104_010 Hb_001021_200--Hb_005104_010 Hb_001021_200--Hb_000917_160 Hb_001021_200--Hb_000236_470 Hb_010661_020 Hb_010661_020 Hb_005542_050--Hb_010661_020 Hb_002325_040 Hb_002325_040 Hb_005542_050--Hb_002325_040 Hb_000926_010 Hb_000926_010 Hb_005542_050--Hb_000926_010 Hb_005542_050--Hb_000556_170 Hb_010417_070 Hb_010417_070 Hb_005542_050--Hb_010417_070 Hb_002477_250 Hb_002477_250 Hb_005542_050--Hb_002477_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2712 37.1158 29.28 13.8007 28.7981 22.7354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6128 8.46911 11.9802 28.3889 17.0892

CAGE analysis