Hb_001047_220

Information

Type -
Description -
Location Contig1047: 119730-135023
Sequence    

Annotation

kegg
ID rcu:RCOM_0557370
description hypothetical protein
nr
ID XP_012092227.1
description PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
swissprot
ID Q0WRC9
description F-box protein SKIP17 OS=Arabidopsis thaliana GN=SKIP17 PE=1 SV=1
trembl
ID A0A067JCB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21923 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein skip17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01628: 119793-121418 , PASA_asmbl_01629: 122888-123097 , PASA_asmbl_01631: 133763-133955 , PASA_asmbl_01632: 133956-134464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_220 0.0 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
2 Hb_000958_140 0.0551842322 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
3 Hb_000462_060 0.0575834105 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
4 Hb_034432_030 0.0585141434 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
5 Hb_001379_110 0.0598990875 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
6 Hb_138596_010 0.0632028743 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
7 Hb_000975_040 0.0640448361 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
8 Hb_017700_010 0.0651930262 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
9 Hb_000343_250 0.0690632102 - - PREDICTED: protein CASC3 [Jatropha curcas]
10 Hb_033642_030 0.0698968737 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
11 Hb_004007_220 0.0704824757 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
12 Hb_009548_020 0.0706526497 - - structural constituent of cell wall, putative [Ricinus communis]
13 Hb_000029_300 0.0713662101 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
14 Hb_002276_170 0.0718379934 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
15 Hb_005993_050 0.0726857907 - - Protein AFR, putative [Ricinus communis]
16 Hb_000060_090 0.0729897043 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
17 Hb_014361_070 0.0735213208 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
18 Hb_002272_130 0.0736015312 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
19 Hb_000789_310 0.0740708066 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
20 Hb_003018_130 0.0752974192 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]

Gene co-expression network

sample Hb_001047_220 Hb_001047_220 Hb_000958_140 Hb_000958_140 Hb_001047_220--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001047_220--Hb_000462_060 Hb_034432_030 Hb_034432_030 Hb_001047_220--Hb_034432_030 Hb_001379_110 Hb_001379_110 Hb_001047_220--Hb_001379_110 Hb_138596_010 Hb_138596_010 Hb_001047_220--Hb_138596_010 Hb_000975_040 Hb_000975_040 Hb_001047_220--Hb_000975_040 Hb_000958_140--Hb_000975_040 Hb_001369_130 Hb_001369_130 Hb_000958_140--Hb_001369_130 Hb_000958_140--Hb_138596_010 Hb_001409_020 Hb_001409_020 Hb_000958_140--Hb_001409_020 Hb_000958_140--Hb_001379_110 Hb_002732_040 Hb_002732_040 Hb_000462_060--Hb_002732_040 Hb_000343_250 Hb_000343_250 Hb_000462_060--Hb_000343_250 Hb_002272_130 Hb_002272_130 Hb_000462_060--Hb_002272_130 Hb_000789_310 Hb_000789_310 Hb_000462_060--Hb_000789_310 Hb_000617_180 Hb_000617_180 Hb_000462_060--Hb_000617_180 Hb_034432_030--Hb_001379_110 Hb_000544_010 Hb_000544_010 Hb_034432_030--Hb_000544_010 Hb_011618_080 Hb_011618_080 Hb_034432_030--Hb_011618_080 Hb_034432_030--Hb_000975_040 Hb_012053_080 Hb_012053_080 Hb_034432_030--Hb_012053_080 Hb_001379_110--Hb_000975_040 Hb_001379_110--Hb_000544_010 Hb_027380_140 Hb_027380_140 Hb_001379_110--Hb_027380_140 Hb_002267_140 Hb_002267_140 Hb_138596_010--Hb_002267_140 Hb_008695_110 Hb_008695_110 Hb_138596_010--Hb_008695_110 Hb_005993_050 Hb_005993_050 Hb_138596_010--Hb_005993_050 Hb_000479_220 Hb_000479_220 Hb_138596_010--Hb_000479_220 Hb_002843_120 Hb_002843_120 Hb_138596_010--Hb_002843_120 Hb_138596_010--Hb_000343_250 Hb_014361_070 Hb_014361_070 Hb_000975_040--Hb_014361_070 Hb_000975_040--Hb_001369_130 Hb_000696_230 Hb_000696_230 Hb_000975_040--Hb_000696_230 Hb_012395_140 Hb_012395_140 Hb_000975_040--Hb_012395_140 Hb_002835_230 Hb_002835_230 Hb_000975_040--Hb_002835_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4299 11.957 13.2233 14.0181 19.361 16.7048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6529 9.15443 15.5295 10.8636 12.7954

CAGE analysis