Hb_001047_230

Information

Type -
Description -
Location Contig1047: 145022-147335
Sequence    

Annotation

kegg
ID rcu:RCOM_0557380
description WD-repeat protein, putative (EC:2.7.11.7)
nr
ID XP_002520730.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9SY00
description COMPASS-like H3K4 histone methylase component WDR5B OS=Arabidopsis thaliana GN=WDR5B PE=1 SV=1
trembl
ID B9S411
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0557380 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01633: 145052-147261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_230 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_003656_070 0.0496468784 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
3 Hb_000608_370 0.0607503468 - - acyl-carrier-protein [Triadica sebifera]
4 Hb_000920_110 0.0657846011 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
5 Hb_129204_030 0.0658275124 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
6 Hb_000334_210 0.0684792594 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
7 Hb_007416_030 0.0703568603 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
8 Hb_001832_060 0.0726508048 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
9 Hb_029866_060 0.0749085866 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
10 Hb_000788_090 0.0749353976 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
11 Hb_000676_180 0.0779429421 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
12 Hb_022425_040 0.0789395465 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
13 Hb_002454_030 0.0791008368 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
14 Hb_000111_330 0.0796279283 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
15 Hb_005511_160 0.0801570124 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
16 Hb_010175_040 0.0813149959 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
17 Hb_000574_480 0.0824803252 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
18 Hb_001979_040 0.0825804957 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
19 Hb_015279_010 0.0828710822 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
20 Hb_000127_180 0.0845627386 - - 40S ribosomal protein S18, putative [Ricinus communis]

Gene co-expression network

sample Hb_001047_230 Hb_001047_230 Hb_003656_070 Hb_003656_070 Hb_001047_230--Hb_003656_070 Hb_000608_370 Hb_000608_370 Hb_001047_230--Hb_000608_370 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_129204_030 Hb_129204_030 Hb_001047_230--Hb_129204_030 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_007416_030 Hb_007416_030 Hb_001047_230--Hb_007416_030 Hb_008173_090 Hb_008173_090 Hb_003656_070--Hb_008173_090 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_000608_370--Hb_129204_030 Hb_000608_370--Hb_007416_030 Hb_000788_090 Hb_000788_090 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_000240_090 Hb_000240_090 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070 Hb_000111_340 Hb_000111_340 Hb_000334_210--Hb_000111_340 Hb_000334_210--Hb_003656_070 Hb_003683_110 Hb_003683_110 Hb_000334_210--Hb_003683_110 Hb_000334_210--Hb_001616_040 Hb_009711_020 Hb_009711_020 Hb_000334_210--Hb_009711_020 Hb_002686_020 Hb_002686_020 Hb_007416_030--Hb_002686_020 Hb_007416_030--Hb_000788_090 Hb_002864_050 Hb_002864_050 Hb_007416_030--Hb_002864_050 Hb_007416_030--Hb_003683_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.9486 40.7013 41.156 33.1225 47.6224 40.1574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.9592 156.919 83.9516 32.4524 30.9978

CAGE analysis