Hb_001047_250

Information

Type -
Description -
Location Contig1047: 153646-159322
Sequence    

Annotation

kegg
ID rcu:RCOM_0557410
description Ent-kaurene synthase A, chloroplast precursor, putative (EC:5.5.1.13)
nr
ID XP_012092234.1
description PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
swissprot
ID O04408
description Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067JPI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21925 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-copalyl diphosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01635: 157535-158059 , PASA_asmbl_01636: 158062-158649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_250 0.0 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
2 Hb_001080_310 0.0816132846 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
3 Hb_001999_220 0.0874845425 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
4 Hb_010712_020 0.0941021257 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
5 Hb_001141_170 0.0951364465 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
6 Hb_146023_010 0.0991121635 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002311_050 0.1055446001 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
8 Hb_001114_300 0.105580643 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
9 Hb_000859_040 0.1069099658 - - Early nodulin 16 precursor, putative [Ricinus communis]
10 Hb_064398_010 0.1076364443 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000160_230 0.107754795 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
12 Hb_012019_030 0.1082199334 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
13 Hb_002281_070 0.1100157537 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
14 Hb_007810_140 0.1105083776 - - Ankyrin repeat-containing protein [Medicago truncatula]
15 Hb_001081_020 0.1112393877 - - Cytochrome P450 76C2 [Triticum urartu]
16 Hb_039342_030 0.1115714678 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000329_410 0.1122047945 - - Beta-expansin 3 precursor, putative [Ricinus communis]
18 Hb_011824_010 0.1125600505 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_002917_010 0.1127972827 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
20 Hb_006196_020 0.1154079073 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]

Gene co-expression network

sample Hb_001047_250 Hb_001047_250 Hb_001080_310 Hb_001080_310 Hb_001047_250--Hb_001080_310 Hb_001999_220 Hb_001999_220 Hb_001047_250--Hb_001999_220 Hb_010712_020 Hb_010712_020 Hb_001047_250--Hb_010712_020 Hb_001141_170 Hb_001141_170 Hb_001047_250--Hb_001141_170 Hb_146023_010 Hb_146023_010 Hb_001047_250--Hb_146023_010 Hb_002311_050 Hb_002311_050 Hb_001047_250--Hb_002311_050 Hb_002281_070 Hb_002281_070 Hb_001080_310--Hb_002281_070 Hb_002234_150 Hb_002234_150 Hb_001080_310--Hb_002234_150 Hb_012019_030 Hb_012019_030 Hb_001080_310--Hb_012019_030 Hb_001080_310--Hb_001141_170 Hb_001080_310--Hb_001999_220 Hb_001410_090 Hb_001410_090 Hb_001999_220--Hb_001410_090 Hb_000859_040 Hb_000859_040 Hb_001999_220--Hb_000859_040 Hb_001999_220--Hb_002281_070 Hb_001114_300 Hb_001114_300 Hb_001999_220--Hb_001114_300 Hb_011824_010 Hb_011824_010 Hb_010712_020--Hb_011824_010 Hb_001863_290 Hb_001863_290 Hb_010712_020--Hb_001863_290 Hb_010712_020--Hb_001141_170 Hb_000160_230 Hb_000160_230 Hb_010712_020--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_010712_020--Hb_007810_140 Hb_064398_010 Hb_064398_010 Hb_010712_020--Hb_064398_010 Hb_001141_170--Hb_012019_030 Hb_001141_170--Hb_001114_300 Hb_004195_040 Hb_004195_040 Hb_001141_170--Hb_004195_040 Hb_001141_170--Hb_000859_040 Hb_001141_170--Hb_011824_010 Hb_146023_010--Hb_010712_020 Hb_146023_010--Hb_064398_010 Hb_176979_010 Hb_176979_010 Hb_146023_010--Hb_176979_010 Hb_002917_010 Hb_002917_010 Hb_146023_010--Hb_002917_010 Hb_000939_030 Hb_000939_030 Hb_146023_010--Hb_000939_030 Hb_000365_300 Hb_000365_300 Hb_002311_050--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002311_050--Hb_005731_080 Hb_002311_050--Hb_001141_170 Hb_002311_050--Hb_012019_030 Hb_002311_050--Hb_004195_040 Hb_000813_120 Hb_000813_120 Hb_002311_050--Hb_000813_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.20736 0.0903024 0.05137 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0357403 0 0.0536022 6.33829 0.0298828

CAGE analysis