Hb_001048_020

Information

Type -
Description -
Location Contig1048: 40667-47411
Sequence    

Annotation

kegg
ID pmum:103335791
description E3 ubiquitin-protein ligase FANCL
nr
ID XP_012079473.1
description PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
swissprot
ID Q9CR14
description E3 ubiquitin-protein ligase FANCL OS=Mus musculus GN=Fancl PE=1 SV=1
trembl
ID A0A067KIP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12591 PE=4 SV=1
Gene Ontology
ID GO:0043240
description e3 ubiquitin-protein ligase fancl isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01641: 40706-42514 , PASA_asmbl_01642: 42690-47266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001048_020 0.0 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
2 Hb_003615_010 0.0619563574 - - 60S ribosomal protein L8, putative [Ricinus communis]
3 Hb_000613_140 0.0690171915 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
4 Hb_001226_160 0.0744273947 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
5 Hb_000510_130 0.0790468192 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
6 Hb_001252_110 0.0797396298 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
7 Hb_023732_070 0.0845148615 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
8 Hb_000444_050 0.0857178758 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
9 Hb_000009_460 0.0861822715 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000926_250 0.0864164208 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
11 Hb_033834_040 0.0879614921 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000380_190 0.0880008816 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
13 Hb_001477_130 0.08933147 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
14 Hb_004223_280 0.0894721486 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
15 Hb_172632_090 0.0904234032 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
16 Hb_002311_350 0.0908026042 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
17 Hb_003996_020 0.091678342 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001242_110 0.0918008494 - - 40S ribosomal protein S18, putative [Ricinus communis]
19 Hb_000058_060 0.0926857477 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
20 Hb_002078_150 0.0927374945 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001048_020 Hb_001048_020 Hb_003615_010 Hb_003615_010 Hb_001048_020--Hb_003615_010 Hb_000613_140 Hb_000613_140 Hb_001048_020--Hb_000613_140 Hb_001226_160 Hb_001226_160 Hb_001048_020--Hb_001226_160 Hb_000510_130 Hb_000510_130 Hb_001048_020--Hb_000510_130 Hb_001252_110 Hb_001252_110 Hb_001048_020--Hb_001252_110 Hb_023732_070 Hb_023732_070 Hb_001048_020--Hb_023732_070 Hb_061090_010 Hb_061090_010 Hb_003615_010--Hb_061090_010 Hb_003615_010--Hb_001226_160 Hb_172632_090 Hb_172632_090 Hb_003615_010--Hb_172632_090 Hb_003615_010--Hb_000613_140 Hb_000926_250 Hb_000926_250 Hb_003615_010--Hb_000926_250 Hb_000720_120 Hb_000720_120 Hb_000613_140--Hb_000720_120 Hb_003020_230 Hb_003020_230 Hb_000613_140--Hb_003020_230 Hb_004223_280 Hb_004223_280 Hb_000613_140--Hb_004223_280 Hb_000613_140--Hb_000926_250 Hb_000613_140--Hb_000510_130 Hb_000656_400 Hb_000656_400 Hb_001226_160--Hb_000656_400 Hb_000056_200 Hb_000056_200 Hb_001226_160--Hb_000056_200 Hb_002660_080 Hb_002660_080 Hb_001226_160--Hb_002660_080 Hb_096563_010 Hb_096563_010 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_020956_020 Hb_020956_020 Hb_000510_130--Hb_020956_020 Hb_010504_020 Hb_010504_020 Hb_000510_130--Hb_010504_020 Hb_005305_080 Hb_005305_080 Hb_000510_130--Hb_005305_080 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020 Hb_002007_060 Hb_002007_060 Hb_001252_110--Hb_002007_060 Hb_002301_140 Hb_002301_140 Hb_001252_110--Hb_002301_140 Hb_001301_160 Hb_001301_160 Hb_001252_110--Hb_001301_160 Hb_001252_110--Hb_023732_070 Hb_000866_270 Hb_000866_270 Hb_001252_110--Hb_000866_270 Hb_001252_110--Hb_001226_160 Hb_000465_060 Hb_000465_060 Hb_023732_070--Hb_000465_060 Hb_000970_010 Hb_000970_010 Hb_023732_070--Hb_000970_010 Hb_001824_070 Hb_001824_070 Hb_023732_070--Hb_001824_070 Hb_000444_050 Hb_000444_050 Hb_023732_070--Hb_000444_050 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_001584_070 Hb_001584_070 Hb_023732_070--Hb_001584_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62235 2.41085 1.54607 1.86281 2.51378 5.4113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.52136 6.7215 4.48735 2.83733 0.809473

CAGE analysis