Hb_001048_070

Information

Type transcription factor
Description TF Family: HB
Location Contig1048: 78678-80271
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14590g
description POPTRDRAFT_718007; hypothetical protein
nr
ID XP_002310877.2
description hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
swissprot
ID P46604
description Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1
trembl
ID B9HFT7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14590g PE=4 SV=2
Gene Ontology
ID GO:0003677
description homeobox-leucine zipper protein hat22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01643: 78649-80139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001048_070 0.0 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
2 Hb_012787_060 0.0764503305 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
3 Hb_003849_200 0.0852488647 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
4 Hb_008021_040 0.0933828047 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
5 Hb_002888_100 0.0989531898 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
6 Hb_002641_140 0.0997278481 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_000342_020 0.1039581084 - - bel1 homeotic protein, putative [Ricinus communis]
8 Hb_016564_060 0.1048555796 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
9 Hb_008725_020 0.1083180386 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
10 Hb_000613_250 0.1094673025 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
11 Hb_002811_110 0.1102685012 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
12 Hb_002450_180 0.1105289551 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004659_100 0.110616573 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007625_030 0.1147405105 - - unknown [Medicago truncatula]
15 Hb_007479_080 0.1147707061 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
16 Hb_043789_010 0.1151994622 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
17 Hb_003025_150 0.1177949298 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000411_050 0.118049007 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
19 Hb_000162_070 0.1206480903 - - phospholipase C, putative [Ricinus communis]
20 Hb_000571_060 0.1207846757 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]

Gene co-expression network

sample Hb_001048_070 Hb_001048_070 Hb_012787_060 Hb_012787_060 Hb_001048_070--Hb_012787_060 Hb_003849_200 Hb_003849_200 Hb_001048_070--Hb_003849_200 Hb_008021_040 Hb_008021_040 Hb_001048_070--Hb_008021_040 Hb_002888_100 Hb_002888_100 Hb_001048_070--Hb_002888_100 Hb_002641_140 Hb_002641_140 Hb_001048_070--Hb_002641_140 Hb_000342_020 Hb_000342_020 Hb_001048_070--Hb_000342_020 Hb_012787_060--Hb_002888_100 Hb_012787_060--Hb_002641_140 Hb_000098_260 Hb_000098_260 Hb_012787_060--Hb_000098_260 Hb_007479_080 Hb_007479_080 Hb_012787_060--Hb_007479_080 Hb_004634_030 Hb_004634_030 Hb_012787_060--Hb_004634_030 Hb_001013_080 Hb_001013_080 Hb_003849_200--Hb_001013_080 Hb_008725_020 Hb_008725_020 Hb_003849_200--Hb_008725_020 Hb_003435_040 Hb_003435_040 Hb_003849_200--Hb_003435_040 Hb_000210_160 Hb_000210_160 Hb_003849_200--Hb_000210_160 Hb_003849_200--Hb_004634_030 Hb_008021_040--Hb_002641_140 Hb_139461_010 Hb_139461_010 Hb_008021_040--Hb_139461_010 Hb_189208_050 Hb_189208_050 Hb_008021_040--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_008021_040--Hb_024868_010 Hb_029142_040 Hb_029142_040 Hb_008021_040--Hb_029142_040 Hb_001562_030 Hb_001562_030 Hb_002888_100--Hb_001562_030 Hb_002888_100--Hb_000098_260 Hb_002888_100--Hb_008725_020 Hb_002888_100--Hb_004634_030 Hb_000411_020 Hb_000411_020 Hb_002641_140--Hb_000411_020 Hb_002641_140--Hb_189208_050 Hb_002641_140--Hb_000098_260 Hb_005357_120 Hb_005357_120 Hb_002641_140--Hb_005357_120 Hb_000613_250 Hb_000613_250 Hb_000342_020--Hb_000613_250 Hb_000472_020 Hb_000472_020 Hb_000342_020--Hb_000472_020 Hb_002902_040 Hb_002902_040 Hb_000342_020--Hb_002902_040 Hb_144703_010 Hb_144703_010 Hb_000342_020--Hb_144703_010 Hb_019496_040 Hb_019496_040 Hb_000342_020--Hb_019496_040 Hb_002151_020 Hb_002151_020 Hb_000342_020--Hb_002151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.400442 29.6973 24.7721 50.872 0.521563 0.688981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0770682 0 0.226043 21.561 15.4686

CAGE analysis