Hb_001049_020

Information

Type -
Description -
Location Contig1049: 29837-33400
Sequence    

Annotation

kegg
ID rcu:RCOM_1689760
description hypothetical protein
nr
ID XP_002509896.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q66GQ2
description Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=2 SV=2
trembl
ID B9RCL2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01665: 31135-31553 , PASA_asmbl_01666: 32418-32991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001049_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004631_210 0.1393385912 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
3 Hb_001341_100 0.1447361015 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
4 Hb_003442_070 0.1459317726 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
5 Hb_165669_010 0.1477707787 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
6 Hb_002577_010 0.1478017957 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
7 Hb_031862_040 0.1570174588 - - purine transporter, putative [Ricinus communis]
8 Hb_000796_250 0.1585511074 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
9 Hb_003972_080 0.1659675825 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
10 Hb_002042_130 0.1685919396 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
11 Hb_034688_020 0.1697493585 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
12 Hb_001486_030 0.1705612625 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000948_080 0.1716027227 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
14 Hb_003994_060 0.1742393481 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
15 Hb_010050_050 0.1761138311 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
16 Hb_002035_110 0.1765249423 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
17 Hb_005285_030 0.1788453887 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
18 Hb_109002_020 0.1800945584 - - PREDICTED: CTP synthase-like [Jatropha curcas]
19 Hb_000402_210 0.1806229115 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
20 Hb_001189_110 0.1809363279 - - NAC transcription factor 066 [Jatropha curcas]

Gene co-expression network

sample Hb_001049_020 Hb_001049_020 Hb_004631_210 Hb_004631_210 Hb_001049_020--Hb_004631_210 Hb_001341_100 Hb_001341_100 Hb_001049_020--Hb_001341_100 Hb_003442_070 Hb_003442_070 Hb_001049_020--Hb_003442_070 Hb_165669_010 Hb_165669_010 Hb_001049_020--Hb_165669_010 Hb_002577_010 Hb_002577_010 Hb_001049_020--Hb_002577_010 Hb_031862_040 Hb_031862_040 Hb_001049_020--Hb_031862_040 Hb_004631_210--Hb_001341_100 Hb_003327_070 Hb_003327_070 Hb_004631_210--Hb_003327_070 Hb_006538_080 Hb_006538_080 Hb_004631_210--Hb_006538_080 Hb_000997_180 Hb_000997_180 Hb_004631_210--Hb_000997_180 Hb_000699_230 Hb_000699_230 Hb_004631_210--Hb_000699_230 Hb_000071_070 Hb_000071_070 Hb_004631_210--Hb_000071_070 Hb_004993_060 Hb_004993_060 Hb_001341_100--Hb_004993_060 Hb_001486_030 Hb_001486_030 Hb_001341_100--Hb_001486_030 Hb_001341_100--Hb_003442_070 Hb_004064_010 Hb_004064_010 Hb_001341_100--Hb_004064_010 Hb_000465_300 Hb_000465_300 Hb_001341_100--Hb_000465_300 Hb_007850_080 Hb_007850_080 Hb_003442_070--Hb_007850_080 Hb_005285_030 Hb_005285_030 Hb_003442_070--Hb_005285_030 Hb_003442_070--Hb_001486_030 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_009510_040 Hb_009510_040 Hb_165669_010--Hb_009510_040 Hb_000329_250 Hb_000329_250 Hb_165669_010--Hb_000329_250 Hb_000496_120 Hb_000496_120 Hb_165669_010--Hb_000496_120 Hb_000215_060 Hb_000215_060 Hb_165669_010--Hb_000215_060 Hb_165669_010--Hb_008173_110 Hb_008771_030 Hb_008771_030 Hb_165669_010--Hb_008771_030 Hb_074783_010 Hb_074783_010 Hb_002577_010--Hb_074783_010 Hb_004328_040 Hb_004328_040 Hb_002577_010--Hb_004328_040 Hb_003647_060 Hb_003647_060 Hb_002577_010--Hb_003647_060 Hb_000007_140 Hb_000007_140 Hb_002577_010--Hb_000007_140 Hb_004200_020 Hb_004200_020 Hb_002577_010--Hb_004200_020 Hb_002577_010--Hb_165669_010 Hb_001114_070 Hb_001114_070 Hb_031862_040--Hb_001114_070 Hb_008066_070 Hb_008066_070 Hb_031862_040--Hb_008066_070 Hb_005433_060 Hb_005433_060 Hb_031862_040--Hb_005433_060 Hb_001621_070 Hb_001621_070 Hb_031862_040--Hb_001621_070 Hb_001433_180 Hb_001433_180 Hb_031862_040--Hb_001433_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14339 6.73649 1.38531 3.98167 0.397453 1.36098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.78326 6.05081 5.56507 7.04266 0.753989

CAGE analysis