Hb_001049_030

Information

Type -
Description -
Location Contig1049: 37380-38620
Sequence    

Annotation

kegg
ID rcu:RCOM_1689770
description catalytic, putative
nr
ID XP_002509897.1
description catalytic, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCL3
description Catalytic, putative OS=Ricinus communis GN=RCOM_1689770 PE=4 SV=1
Gene Ontology
ID GO:0016829
description lactoylglutathione lyase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01668: 38571-39067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001049_030 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_006573_200 0.1002704684 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
3 Hb_011218_070 0.104429201 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
4 Hb_000077_230 0.1142387329 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
5 Hb_012395_220 0.1193453567 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
6 Hb_042038_020 0.1201308124 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
7 Hb_000953_010 0.1272048104 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
8 Hb_000062_250 0.1277488548 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
9 Hb_000173_400 0.1286650966 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
10 Hb_023827_040 0.1287382653 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
11 Hb_000031_050 0.1288737968 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
12 Hb_000987_140 0.133668839 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
13 Hb_012395_160 0.1394966161 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
14 Hb_005914_150 0.1398554608 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
15 Hb_004734_060 0.1414491288 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
16 Hb_012573_080 0.1415026452 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
17 Hb_000865_080 0.1419904769 - - arsenite-resistance protein, putative [Ricinus communis]
18 Hb_000755_030 0.1424350395 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
19 Hb_000077_070 0.1428445059 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
20 Hb_000025_360 0.1430229474 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001049_030 Hb_001049_030 Hb_006573_200 Hb_006573_200 Hb_001049_030--Hb_006573_200 Hb_011218_070 Hb_011218_070 Hb_001049_030--Hb_011218_070 Hb_000077_230 Hb_000077_230 Hb_001049_030--Hb_000077_230 Hb_012395_220 Hb_012395_220 Hb_001049_030--Hb_012395_220 Hb_042038_020 Hb_042038_020 Hb_001049_030--Hb_042038_020 Hb_000953_010 Hb_000953_010 Hb_001049_030--Hb_000953_010 Hb_000031_050 Hb_000031_050 Hb_006573_200--Hb_000031_050 Hb_006573_200--Hb_000077_230 Hb_006573_200--Hb_000953_010 Hb_124315_020 Hb_124315_020 Hb_006573_200--Hb_124315_020 Hb_000077_070 Hb_000077_070 Hb_006573_200--Hb_000077_070 Hb_001728_100 Hb_001728_100 Hb_006573_200--Hb_001728_100 Hb_011218_070--Hb_000077_230 Hb_003216_080 Hb_003216_080 Hb_011218_070--Hb_003216_080 Hb_000465_480 Hb_000465_480 Hb_011218_070--Hb_000465_480 Hb_001930_010 Hb_001930_010 Hb_011218_070--Hb_001930_010 Hb_000264_320 Hb_000264_320 Hb_011218_070--Hb_000264_320 Hb_000062_250 Hb_000062_250 Hb_000077_230--Hb_000062_250 Hb_000077_230--Hb_000077_070 Hb_000025_360 Hb_000025_360 Hb_000077_230--Hb_000025_360 Hb_000107_500 Hb_000107_500 Hb_000077_230--Hb_000107_500 Hb_000077_230--Hb_000031_050 Hb_000174_220 Hb_000174_220 Hb_000077_230--Hb_000174_220 Hb_012807_050 Hb_012807_050 Hb_012395_220--Hb_012807_050 Hb_002813_050 Hb_002813_050 Hb_012395_220--Hb_002813_050 Hb_000680_050 Hb_000680_050 Hb_012395_220--Hb_000680_050 Hb_010172_090 Hb_010172_090 Hb_012395_220--Hb_010172_090 Hb_000500_040 Hb_000500_040 Hb_012395_220--Hb_000500_040 Hb_001141_390 Hb_001141_390 Hb_012395_220--Hb_001141_390 Hb_000140_070 Hb_000140_070 Hb_042038_020--Hb_000140_070 Hb_042038_020--Hb_012807_050 Hb_000865_080 Hb_000865_080 Hb_042038_020--Hb_000865_080 Hb_002188_110 Hb_002188_110 Hb_042038_020--Hb_002188_110 Hb_000959_040 Hb_000959_040 Hb_042038_020--Hb_000959_040 Hb_023827_040 Hb_023827_040 Hb_042038_020--Hb_023827_040 Hb_000803_190 Hb_000803_190 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9243 2.18491 0.621619 0.473069 1.1509 2.57857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.510241 0.801936 1.84461 0.531464 0.336323

CAGE analysis