Hb_001049_090

Information

Type -
Description -
Location Contig1049: 174252-175739
Sequence    

Annotation

kegg
ID rcu:RCOM_1690020
description 6-phosphogluconate dehydrogenase, putative (EC:1.1.1.44)
nr
ID XP_002509902.1
description 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9FFR3
description 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana GN=At5g41670 PE=1 SV=1
trembl
ID B9RCL8
description 6-phosphogluconate dehydrogenase, decarboxylating OS=Ricinus communis GN=RCOM_1690020 PE=3 SV=1
Gene Ontology
ID GO:0004616
description 6-phosphogluconate decarboxylating chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001049_090 0.0 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
2 Hb_000202_040 0.0964695145 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
3 Hb_001227_060 0.096512878 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
4 Hb_000363_240 0.0992894261 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
5 Hb_000100_180 0.1134602752 - - PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Jatropha curcas]
6 Hb_011129_040 0.1134708984 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
7 Hb_000050_190 0.1152588937 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004672_040 0.1160931928 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
9 Hb_000544_090 0.1186599378 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
10 Hb_003747_100 0.1215397271 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_001329_140 0.1217565444 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
12 Hb_003168_110 0.1217806912 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
13 Hb_000679_270 0.1229056326 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
14 Hb_000077_140 0.1245340455 - - structural constituent of cell wall, putative [Ricinus communis]
15 Hb_003504_030 0.1246226821 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
16 Hb_001500_050 0.1250480133 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
17 Hb_006915_030 0.1257887716 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
18 Hb_007336_010 0.1259388748 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
19 Hb_021409_180 0.1265073891 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
20 Hb_062135_030 0.1267903569 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001049_090 Hb_001049_090 Hb_000202_040 Hb_000202_040 Hb_001049_090--Hb_000202_040 Hb_001227_060 Hb_001227_060 Hb_001049_090--Hb_001227_060 Hb_000363_240 Hb_000363_240 Hb_001049_090--Hb_000363_240 Hb_000100_180 Hb_000100_180 Hb_001049_090--Hb_000100_180 Hb_011129_040 Hb_011129_040 Hb_001049_090--Hb_011129_040 Hb_000050_190 Hb_000050_190 Hb_001049_090--Hb_000050_190 Hb_005054_230 Hb_005054_230 Hb_000202_040--Hb_005054_230 Hb_000930_030 Hb_000930_030 Hb_000202_040--Hb_000930_030 Hb_062135_030 Hb_062135_030 Hb_000202_040--Hb_062135_030 Hb_000521_080 Hb_000521_080 Hb_000202_040--Hb_000521_080 Hb_002234_180 Hb_002234_180 Hb_000202_040--Hb_002234_180 Hb_004156_050 Hb_004156_050 Hb_001227_060--Hb_004156_050 Hb_003168_110 Hb_003168_110 Hb_001227_060--Hb_003168_110 Hb_001227_060--Hb_000050_190 Hb_001329_140 Hb_001329_140 Hb_001227_060--Hb_001329_140 Hb_001213_050 Hb_001213_050 Hb_001227_060--Hb_001213_050 Hb_004672_040 Hb_004672_040 Hb_001227_060--Hb_004672_040 Hb_003504_030 Hb_003504_030 Hb_000363_240--Hb_003504_030 Hb_000363_240--Hb_001329_140 Hb_001674_030 Hb_001674_030 Hb_000363_240--Hb_001674_030 Hb_007336_010 Hb_007336_010 Hb_000363_240--Hb_007336_010 Hb_003747_100 Hb_003747_100 Hb_000363_240--Hb_003747_100 Hb_007508_080 Hb_007508_080 Hb_000363_240--Hb_007508_080 Hb_000544_090 Hb_000544_090 Hb_000100_180--Hb_000544_090 Hb_023480_010 Hb_023480_010 Hb_000100_180--Hb_023480_010 Hb_002022_060 Hb_002022_060 Hb_000100_180--Hb_002022_060 Hb_000100_160 Hb_000100_160 Hb_000100_180--Hb_000100_160 Hb_007441_130 Hb_007441_130 Hb_000100_180--Hb_007441_130 Hb_002849_100 Hb_002849_100 Hb_011129_040--Hb_002849_100 Hb_011129_040--Hb_003504_030 Hb_000343_250 Hb_000343_250 Hb_011129_040--Hb_000343_250 Hb_000037_190 Hb_000037_190 Hb_011129_040--Hb_000037_190 Hb_000699_030 Hb_000699_030 Hb_011129_040--Hb_000699_030 Hb_021443_040 Hb_021443_040 Hb_011129_040--Hb_021443_040 Hb_000050_190--Hb_004672_040 Hb_000599_180 Hb_000599_180 Hb_000050_190--Hb_000599_180 Hb_009548_020 Hb_009548_020 Hb_000050_190--Hb_009548_020 Hb_005291_050 Hb_005291_050 Hb_000050_190--Hb_005291_050 Hb_000050_190--Hb_003168_110 Hb_006634_070 Hb_006634_070 Hb_000050_190--Hb_006634_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.6431 45.3206 24.9119 41.5703 18.913 44.0098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.0928 16.3164 52.1164 32.2808 48.1252

CAGE analysis