Hb_001049_110

Information

Type -
Description -
Location Contig1049: 177946-184143
Sequence    

Annotation

kegg
ID egr:104441686
description translation initiation factor IF-2, mitochondrial
nr
ID XP_012086780.1
description PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID B8EIA7
description Translation initiation factor IF-2 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=infB PE=3 SV=1
trembl
ID A0A067JRA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20499 PE=3 SV=1
Gene Ontology
ID GO:0003743
description translation initiation factor if- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01672: 177802-179650 , PASA_asmbl_01673: 181003-184245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001049_110 0.0 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_015941_020 0.0752265999 - - -
3 Hb_000061_210 0.0790787605 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
4 Hb_005686_090 0.0808495253 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
5 Hb_018133_090 0.0827838413 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000295_080 0.0854876648 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
7 Hb_000556_090 0.0873562512 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
8 Hb_103118_010 0.0878771246 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
9 Hb_029510_050 0.0894593583 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
10 Hb_001546_060 0.0902880492 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
11 Hb_001366_180 0.0934688707 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
12 Hb_000352_190 0.0985283849 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
13 Hb_002408_020 0.0991358587 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
14 Hb_003020_220 0.0997702988 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
15 Hb_005237_050 0.1004957004 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
16 Hb_000861_020 0.1006865168 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
17 Hb_001671_010 0.1009532032 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
18 Hb_005144_050 0.1011248443 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
19 Hb_003153_010 0.1017145425 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
20 Hb_005116_050 0.102027426 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001049_110 Hb_001049_110 Hb_015941_020 Hb_015941_020 Hb_001049_110--Hb_015941_020 Hb_000061_210 Hb_000061_210 Hb_001049_110--Hb_000061_210 Hb_005686_090 Hb_005686_090 Hb_001049_110--Hb_005686_090 Hb_018133_090 Hb_018133_090 Hb_001049_110--Hb_018133_090 Hb_000295_080 Hb_000295_080 Hb_001049_110--Hb_000295_080 Hb_000556_090 Hb_000556_090 Hb_001049_110--Hb_000556_090 Hb_001671_010 Hb_001671_010 Hb_015941_020--Hb_001671_010 Hb_010883_040 Hb_010883_040 Hb_015941_020--Hb_010883_040 Hb_015941_020--Hb_005686_090 Hb_015941_020--Hb_018133_090 Hb_000883_060 Hb_000883_060 Hb_015941_020--Hb_000883_060 Hb_103118_010 Hb_103118_010 Hb_000061_210--Hb_103118_010 Hb_008453_030 Hb_008453_030 Hb_000061_210--Hb_008453_030 Hb_002408_020 Hb_002408_020 Hb_000061_210--Hb_002408_020 Hb_012675_050 Hb_012675_050 Hb_000061_210--Hb_012675_050 Hb_000421_220 Hb_000421_220 Hb_000061_210--Hb_000421_220 Hb_005736_020 Hb_005736_020 Hb_005686_090--Hb_005736_020 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_005686_090--Hb_029510_050 Hb_001008_120 Hb_001008_120 Hb_005686_090--Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_005686_090--Hb_028912_050 Hb_000337_050 Hb_000337_050 Hb_018133_090--Hb_000337_050 Hb_011716_130 Hb_011716_130 Hb_018133_090--Hb_011716_130 Hb_002811_130 Hb_002811_130 Hb_018133_090--Hb_002811_130 Hb_018133_090--Hb_103118_010 Hb_002374_240 Hb_002374_240 Hb_000295_080--Hb_002374_240 Hb_000184_170 Hb_000184_170 Hb_000295_080--Hb_000184_170 Hb_000295_080--Hb_000556_090 Hb_001482_040 Hb_001482_040 Hb_000295_080--Hb_001482_040 Hb_000288_030 Hb_000288_030 Hb_000295_080--Hb_000288_030 Hb_004108_160 Hb_004108_160 Hb_000556_090--Hb_004108_160 Hb_004052_170 Hb_004052_170 Hb_000556_090--Hb_004052_170 Hb_003153_010 Hb_003153_010 Hb_000556_090--Hb_003153_010 Hb_011228_010 Hb_011228_010 Hb_000556_090--Hb_011228_010 Hb_001818_100 Hb_001818_100 Hb_000556_090--Hb_001818_100 Hb_000340_230 Hb_000340_230 Hb_000556_090--Hb_000340_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41861 2.62473 2.78547 4.04251 4.58181 4.13717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13859 6.48587 6.60161 3.42828 9.04854

CAGE analysis