Hb_001050_050

Information

Type -
Description -
Location Contig1050: 82505-89286
Sequence    

Annotation

kegg
ID pop:POPTR_0018s14060g
description cytochrome P450 71B10 family protein
nr
ID XP_012084541.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Jatropha curcas]
swissprot
ID Q9SVZ9
description Oxysterol-binding protein-related protein 4A OS=Arabidopsis thaliana GN=ORP4A PE=2 SV=2
trembl
ID U5FJB0
description Cytochrome P450 71B10 family protein OS=Populus trichocarpa GN=POPTR_0018s14060g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01707: 63094-96684 , PASA_asmbl_01710: 54657-88947 , PASA_asmbl_01711: 88365-88947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001050_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Jatropha curcas]
2 Hb_052128_010 0.1285888764 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Nicotiana sylvestris]
3 Hb_000022_190 0.1300906291 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
4 Hb_005754_030 0.1305584469 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
5 Hb_089246_010 0.1333389746 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
6 Hb_002986_070 0.1354868959 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
7 Hb_001396_240 0.138922209 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
8 Hb_004994_350 0.1438802756 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
9 Hb_011310_100 0.1455465255 - - hypothetical protein CICLE_v10008199mg [Citrus clementina]
10 Hb_013459_010 0.1473740328 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
11 Hb_001178_030 0.1480842431 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
12 Hb_000453_030 0.1483816201 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
13 Hb_005701_130 0.1502388484 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
14 Hb_005116_110 0.1503024835 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
15 Hb_012799_050 0.150700026 - - PREDICTED: remorin [Jatropha curcas]
16 Hb_007253_020 0.1543410635 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
17 Hb_007545_130 0.1551049563 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
18 Hb_002249_030 0.155400822 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
19 Hb_011457_140 0.1557631527 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
20 Hb_000806_030 0.1564691286 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]

Gene co-expression network

sample Hb_001050_050 Hb_001050_050 Hb_052128_010 Hb_052128_010 Hb_001050_050--Hb_052128_010 Hb_000022_190 Hb_000022_190 Hb_001050_050--Hb_000022_190 Hb_005754_030 Hb_005754_030 Hb_001050_050--Hb_005754_030 Hb_089246_010 Hb_089246_010 Hb_001050_050--Hb_089246_010 Hb_002986_070 Hb_002986_070 Hb_001050_050--Hb_002986_070 Hb_001396_240 Hb_001396_240 Hb_001050_050--Hb_001396_240 Hb_054865_020 Hb_054865_020 Hb_052128_010--Hb_054865_020 Hb_052128_010--Hb_001396_240 Hb_001396_020 Hb_001396_020 Hb_052128_010--Hb_001396_020 Hb_004466_050 Hb_004466_050 Hb_052128_010--Hb_004466_050 Hb_002307_080 Hb_002307_080 Hb_052128_010--Hb_002307_080 Hb_000453_030 Hb_000453_030 Hb_052128_010--Hb_000453_030 Hb_000069_570 Hb_000069_570 Hb_000022_190--Hb_000069_570 Hb_000022_190--Hb_089246_010 Hb_001018_090 Hb_001018_090 Hb_000022_190--Hb_001018_090 Hb_008014_040 Hb_008014_040 Hb_000022_190--Hb_008014_040 Hb_000103_340 Hb_000103_340 Hb_000022_190--Hb_000103_340 Hb_000635_090 Hb_000635_090 Hb_000022_190--Hb_000635_090 Hb_005754_030--Hb_002986_070 Hb_007735_060 Hb_007735_060 Hb_005754_030--Hb_007735_060 Hb_002016_050 Hb_002016_050 Hb_005754_030--Hb_002016_050 Hb_015183_080 Hb_015183_080 Hb_005754_030--Hb_015183_080 Hb_007234_010 Hb_007234_010 Hb_005754_030--Hb_007234_010 Hb_001008_070 Hb_001008_070 Hb_089246_010--Hb_001008_070 Hb_000320_470 Hb_000320_470 Hb_089246_010--Hb_000320_470 Hb_001008_050 Hb_001008_050 Hb_089246_010--Hb_001008_050 Hb_000181_100 Hb_000181_100 Hb_089246_010--Hb_000181_100 Hb_031091_020 Hb_031091_020 Hb_089246_010--Hb_031091_020 Hb_002986_070--Hb_002016_050 Hb_007545_130 Hb_007545_130 Hb_002986_070--Hb_007545_130 Hb_015778_060 Hb_015778_060 Hb_002986_070--Hb_015778_060 Hb_005523_010 Hb_005523_010 Hb_002986_070--Hb_005523_010 Hb_000186_080 Hb_000186_080 Hb_002986_070--Hb_000186_080 Hb_013459_010 Hb_013459_010 Hb_002986_070--Hb_013459_010 Hb_003462_060 Hb_003462_060 Hb_001396_240--Hb_003462_060 Hb_010344_030 Hb_010344_030 Hb_001396_240--Hb_010344_030 Hb_004994_350 Hb_004994_350 Hb_001396_240--Hb_004994_350 Hb_001396_240--Hb_004466_050 Hb_005250_010 Hb_005250_010 Hb_001396_240--Hb_005250_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.576109 1.56195 1.36847 0.932642 0.449545 1.54102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145498 0.362517 0.830668 0.584866 2.25361

CAGE analysis