Hb_001051_020

Information

Type -
Description -
Location Contig1051: 25894-29073
Sequence    

Annotation

kegg
ID rcu:RCOM_0034230
description carboxy-lyase, putative
nr
ID XP_010089966.1
description hypothetical protein L484_008044 [Morus notabilis]
swissprot
ID Q0JBP5
description Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica GN=LOGL6 PE=2 SV=1
trembl
ID W9QRY6
description Uncharacterized protein OS=Morus notabilis GN=L484_008044 PE=4 SV=1
Gene Ontology
ID GO:0016787
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01722: 25855-29079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001051_020 0.0 - - hypothetical protein L484_008044 [Morus notabilis]
2 Hb_034299_010 0.0418536904 - - F-box and wd40 domain protein, putative [Ricinus communis]
3 Hb_004329_030 0.0501409529 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
4 Hb_002042_220 0.0788195795 - - Kinesin heavy chain, putative [Ricinus communis]
5 Hb_000007_290 0.0824423739 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
6 Hb_002010_040 0.0839359756 - - -
7 Hb_002081_140 0.0855304603 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007534_080 0.0867240503 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
9 Hb_003647_070 0.0885159534 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
10 Hb_005474_070 0.088738419 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
11 Hb_004197_030 0.0912129568 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
12 Hb_002960_180 0.0913298349 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
13 Hb_002675_220 0.0937445159 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
14 Hb_094074_010 0.0947025329 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
15 Hb_099263_010 0.0952435748 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
16 Hb_000940_120 0.0982758406 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
17 Hb_133076_010 0.0990541145 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
18 Hb_003058_150 0.0992131363 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
19 Hb_002250_040 0.1029533154 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
20 Hb_045260_010 0.1033733171 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001051_020 Hb_001051_020 Hb_034299_010 Hb_034299_010 Hb_001051_020--Hb_034299_010 Hb_004329_030 Hb_004329_030 Hb_001051_020--Hb_004329_030 Hb_002042_220 Hb_002042_220 Hb_001051_020--Hb_002042_220 Hb_000007_290 Hb_000007_290 Hb_001051_020--Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_001051_020--Hb_002010_040 Hb_002081_140 Hb_002081_140 Hb_001051_020--Hb_002081_140 Hb_034299_010--Hb_004329_030 Hb_099263_010 Hb_099263_010 Hb_034299_010--Hb_099263_010 Hb_002960_180 Hb_002960_180 Hb_034299_010--Hb_002960_180 Hb_034299_010--Hb_000007_290 Hb_034299_010--Hb_002010_040 Hb_004329_030--Hb_002081_140 Hb_004329_030--Hb_002960_180 Hb_094074_010 Hb_094074_010 Hb_004329_030--Hb_094074_010 Hb_002929_040 Hb_002929_040 Hb_004329_030--Hb_002929_040 Hb_002042_220--Hb_000007_290 Hb_005474_070 Hb_005474_070 Hb_002042_220--Hb_005474_070 Hb_002042_220--Hb_002010_040 Hb_004197_030 Hb_004197_030 Hb_002042_220--Hb_004197_030 Hb_003647_070 Hb_003647_070 Hb_002042_220--Hb_003647_070 Hb_000940_120 Hb_000940_120 Hb_002042_220--Hb_000940_120 Hb_000007_290--Hb_002010_040 Hb_000007_290--Hb_003647_070 Hb_000007_290--Hb_005474_070 Hb_045260_010 Hb_045260_010 Hb_000007_290--Hb_045260_010 Hb_000007_290--Hb_099263_010 Hb_002010_040--Hb_003647_070 Hb_002010_040--Hb_005474_070 Hb_002010_040--Hb_045260_010 Hb_002010_040--Hb_099263_010 Hb_000997_370 Hb_000997_370 Hb_002081_140--Hb_000997_370 Hb_002675_220 Hb_002675_220 Hb_002081_140--Hb_002675_220 Hb_003253_030 Hb_003253_030 Hb_002081_140--Hb_003253_030 Hb_002081_140--Hb_034299_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.450586 1.74757 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.100228 6.11264

CAGE analysis