Hb_001051_080

Information

Type -
Description -
Location Contig1051: 110551-116487
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01660g
description POPTRDRAFT_768390; hypothetical protein
nr
ID KCW85748.1
description hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
swissprot
ID Q3EDG5
description Protein-tyrosine sulfotransferase OS=Arabidopsis thaliana GN=TPST PE=1 SV=3
trembl
ID A0A059D4S3
description Sulfotransferase OS=Eucalyptus grandis GN=EUGRSUZ_B02508 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein-tyrosine sulfotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01730: 110851-116730 , PASA_asmbl_01731: 114331-114480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001051_080 0.0 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
2 Hb_004631_180 0.0553029712 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
3 Hb_007416_300 0.0577889188 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
4 Hb_000120_430 0.058304847 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
5 Hb_033834_030 0.0616762724 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
6 Hb_000309_040 0.06301939 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
7 Hb_003549_150 0.064394181 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
8 Hb_010381_090 0.0673068112 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
9 Hb_000617_100 0.0675098791 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
10 Hb_006916_040 0.0691616236 - - 60S ribosomal protein L7a, putative [Ricinus communis]
11 Hb_012322_020 0.0722580145 - - -
12 Hb_002235_210 0.0727137395 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
13 Hb_006588_070 0.0728799508 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
14 Hb_000484_030 0.0741447327 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
15 Hb_000076_160 0.0743468654 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
16 Hb_000101_380 0.0746058193 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
17 Hb_158062_010 0.0752005422 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
18 Hb_001143_180 0.075452728 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
19 Hb_001635_160 0.0757428828 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
20 Hb_002872_030 0.0761845663 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_001051_080 Hb_001051_080 Hb_004631_180 Hb_004631_180 Hb_001051_080--Hb_004631_180 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_000120_430 Hb_000120_430 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_003549_150 Hb_003549_150 Hb_001051_080--Hb_003549_150 Hb_006916_040 Hb_006916_040 Hb_004631_180--Hb_006916_040 Hb_000576_020 Hb_000576_020 Hb_004631_180--Hb_000576_020 Hb_004631_180--Hb_000120_430 Hb_000256_190 Hb_000256_190 Hb_004631_180--Hb_000256_190 Hb_002235_210 Hb_002235_210 Hb_004631_180--Hb_002235_210 Hb_010381_090 Hb_010381_090 Hb_007416_300--Hb_010381_090 Hb_002872_030 Hb_002872_030 Hb_007416_300--Hb_002872_030 Hb_007416_300--Hb_003549_150 Hb_033642_030 Hb_033642_030 Hb_007416_300--Hb_033642_030 Hb_008453_140 Hb_008453_140 Hb_007416_300--Hb_008453_140 Hb_000020_150 Hb_000020_150 Hb_000120_430--Hb_000020_150 Hb_000617_100 Hb_000617_100 Hb_000120_430--Hb_000617_100 Hb_000120_430--Hb_033834_030 Hb_116349_070 Hb_116349_070 Hb_000120_430--Hb_116349_070 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_005337_090 Hb_005337_090 Hb_033834_030--Hb_005337_090 Hb_002175_030 Hb_002175_030 Hb_033834_030--Hb_002175_030 Hb_033834_030--Hb_000020_150 Hb_002078_110 Hb_002078_110 Hb_000309_040--Hb_002078_110 Hb_000076_160 Hb_000076_160 Hb_000309_040--Hb_000076_160 Hb_001751_140 Hb_001751_140 Hb_000309_040--Hb_001751_140 Hb_138596_010 Hb_138596_010 Hb_000309_040--Hb_138596_010 Hb_002835_230 Hb_002835_230 Hb_000309_040--Hb_002835_230 Hb_003549_150--Hb_010381_090 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_003549_150--Hb_000617_100 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9186 11.3336 10.9023 14.0283 14.2588 16.2446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3355 11.1564 7.4909 8.71785 5.89129

CAGE analysis