Hb_001051_090

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig1051: 118750-123650
Sequence    

Annotation

kegg
ID rcu:RCOM_0034600
description GATA transcription factor, putative
nr
ID XP_012064808.1
description PREDICTED: GATA transcription factor 11 [Jatropha curcas]
swissprot
ID Q6DBP8
description GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1
trembl
ID A0A067LHG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05507 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01733: 118779-123790 , PASA_asmbl_01736: 118811-123233 , PASA_asmbl_01737: 119827-119940 , PASA_asmbl_01738: 118939-119258 , PASA_asmbl_01739: 122828-123177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001051_090 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
2 Hb_002896_060 0.0628655337 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
3 Hb_027380_030 0.0819966036 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
4 Hb_000599_170 0.1002458514 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
5 Hb_002805_060 0.1057616132 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
6 Hb_004223_110 0.1128032235 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
7 Hb_000453_140 0.1142509316 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
8 Hb_001952_120 0.1148561653 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
9 Hb_013818_030 0.1198379562 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001301_220 0.1209439698 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
11 Hb_003894_040 0.1220462391 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_002092_100 0.1287391327 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
13 Hb_000030_060 0.1298932884 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
14 Hb_000718_070 0.1300432956 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008921_010 0.1310199258 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
16 Hb_000265_220 0.1323891609 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
17 Hb_003097_080 0.1337869186 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
18 Hb_000069_590 0.1339673853 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
19 Hb_001269_310 0.1345976182 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
20 Hb_002042_030 0.1347517344 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001051_090 Hb_001051_090 Hb_002896_060 Hb_002896_060 Hb_001051_090--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_001051_090--Hb_027380_030 Hb_000599_170 Hb_000599_170 Hb_001051_090--Hb_000599_170 Hb_002805_060 Hb_002805_060 Hb_001051_090--Hb_002805_060 Hb_004223_110 Hb_004223_110 Hb_001051_090--Hb_004223_110 Hb_000453_140 Hb_000453_140 Hb_001051_090--Hb_000453_140 Hb_002896_060--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_002896_060--Hb_002092_100 Hb_002896_060--Hb_000453_140 Hb_001952_120 Hb_001952_120 Hb_002896_060--Hb_001952_120 Hb_002896_060--Hb_002805_060 Hb_027380_030--Hb_002805_060 Hb_027380_030--Hb_000599_170 Hb_027380_030--Hb_000453_140 Hb_006915_020 Hb_006915_020 Hb_027380_030--Hb_006915_020 Hb_000599_170--Hb_002805_060 Hb_003894_040 Hb_003894_040 Hb_000599_170--Hb_003894_040 Hb_000599_170--Hb_006915_020 Hb_000599_170--Hb_002092_100 Hb_002805_060--Hb_002092_100 Hb_002805_060--Hb_003894_040 Hb_002681_170 Hb_002681_170 Hb_002805_060--Hb_002681_170 Hb_007163_060 Hb_007163_060 Hb_004223_110--Hb_007163_060 Hb_000608_350 Hb_000608_350 Hb_004223_110--Hb_000608_350 Hb_008921_010 Hb_008921_010 Hb_004223_110--Hb_008921_010 Hb_172257_010 Hb_172257_010 Hb_004223_110--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_004223_110--Hb_000589_190 Hb_005322_050 Hb_005322_050 Hb_004223_110--Hb_005322_050 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_000453_140--Hb_002092_100 Hb_000076_260 Hb_000076_260 Hb_000453_140--Hb_000076_260 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1106 17.2377 23.0477 14.908 37.4796 14.238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38414 4.91443 5.33759 9.32137 8.03523

CAGE analysis