Hb_001052_020

Information

Type -
Description -
Location Contig1052: 74496-76371
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24570g
description POPTRDRAFT_660157; hypothetical protein
nr
ID KDP43387.1
description hypothetical protein JCGZ_26487 [Jatropha curcas]
swissprot
ID Q9SDK9
description Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica GN=RPA3 PE=1 SV=1
trembl
ID A0A067L4P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26487 PE=4 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 14 kda subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01762: 74475-76452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001052_020 0.0 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
2 Hb_000062_280 0.0682971345 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
3 Hb_165110_010 0.0712527393 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
4 Hb_000962_060 0.0774845435 - - PREDICTED: uncharacterized protein LOC105646517 [Jatropha curcas]
5 Hb_089140_070 0.1079492335 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
6 Hb_000506_050 0.1152925504 - - PREDICTED: thymidine kinase [Jatropha curcas]
7 Hb_012092_040 0.1154934114 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
8 Hb_180864_010 0.1167050709 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
9 Hb_020025_030 0.1196215902 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
10 Hb_001242_170 0.1202858813 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000977_190 0.12275842 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000089_090 0.1229148045 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
13 Hb_000140_200 0.1233955382 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
14 Hb_000984_280 0.1238296505 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
15 Hb_085600_010 0.1249950297 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
16 Hb_000853_250 0.1250268685 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
17 Hb_003082_090 0.1255695388 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
18 Hb_001205_290 0.1257292327 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
19 Hb_001141_440 0.126101176 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
20 Hb_002217_400 0.1265964068 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]

Gene co-expression network

sample Hb_001052_020 Hb_001052_020 Hb_000062_280 Hb_000062_280 Hb_001052_020--Hb_000062_280 Hb_165110_010 Hb_165110_010 Hb_001052_020--Hb_165110_010 Hb_000962_060 Hb_000962_060 Hb_001052_020--Hb_000962_060 Hb_089140_070 Hb_089140_070 Hb_001052_020--Hb_089140_070 Hb_000506_050 Hb_000506_050 Hb_001052_020--Hb_000506_050 Hb_012092_040 Hb_012092_040 Hb_001052_020--Hb_012092_040 Hb_000853_250 Hb_000853_250 Hb_000062_280--Hb_000853_250 Hb_000062_280--Hb_165110_010 Hb_001141_440 Hb_001141_440 Hb_000062_280--Hb_001141_440 Hb_000062_280--Hb_000962_060 Hb_000062_280--Hb_000506_050 Hb_165110_010--Hb_000506_050 Hb_000086_510 Hb_000086_510 Hb_165110_010--Hb_000086_510 Hb_000320_240 Hb_000320_240 Hb_165110_010--Hb_000320_240 Hb_000157_020 Hb_000157_020 Hb_165110_010--Hb_000157_020 Hb_009545_060 Hb_009545_060 Hb_000962_060--Hb_009545_060 Hb_000089_090 Hb_000089_090 Hb_000962_060--Hb_000089_090 Hb_000962_060--Hb_012092_040 Hb_001247_060 Hb_001247_060 Hb_000962_060--Hb_001247_060 Hb_001971_040 Hb_001971_040 Hb_089140_070--Hb_001971_040 Hb_089140_070--Hb_012092_040 Hb_006810_040 Hb_006810_040 Hb_089140_070--Hb_006810_040 Hb_010080_050 Hb_010080_050 Hb_089140_070--Hb_010080_050 Hb_000390_010 Hb_000390_010 Hb_089140_070--Hb_000390_010 Hb_000035_230 Hb_000035_230 Hb_089140_070--Hb_000035_230 Hb_000506_050--Hb_000157_020 Hb_000339_050 Hb_000339_050 Hb_000506_050--Hb_000339_050 Hb_000805_270 Hb_000805_270 Hb_000506_050--Hb_000805_270 Hb_004357_030 Hb_004357_030 Hb_000506_050--Hb_004357_030 Hb_012092_040--Hb_000089_090 Hb_012092_040--Hb_001247_060 Hb_012092_040--Hb_000035_230 Hb_003464_010 Hb_003464_010 Hb_012092_040--Hb_003464_010 Hb_012092_040--Hb_000390_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.18795 10.8266 19.0831 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.97301 0.704117

CAGE analysis