Hb_001052_030

Information

Type -
Description -
Location Contig1052: 77472-84126
Sequence    

Annotation

kegg
ID rcu:RCOM_1176330
description hypothetical protein
nr
ID XP_012065764.1
description PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZQZ9
description Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1
trembl
ID A0A067L818
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26488 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein tic 20- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01763: 77633-78134 , PASA_asmbl_01764: 78217-78491 , PASA_asmbl_01765: 78539-80460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001052_030 0.0 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
2 Hb_146225_010 0.0751303185 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
3 Hb_002045_230 0.1005348721 - - Ammonium transporter 2 [Theobroma cacao]
4 Hb_000094_110 0.10204753 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005841_050 0.1093875141 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
6 Hb_002918_140 0.120338568 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
7 Hb_000123_160 0.1228379361 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
8 Hb_002326_180 0.1229003564 - - Protein Z, putative [Ricinus communis]
9 Hb_000264_020 0.1234496303 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
10 Hb_000563_240 0.1235888256 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
11 Hb_001386_050 0.1244663174 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
12 Hb_000175_130 0.1266341719 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
13 Hb_002759_240 0.1278285691 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
14 Hb_000676_240 0.1280444634 - - thioredoxin H-type 2 [Hevea brasiliensis]
15 Hb_017862_010 0.1284315761 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
16 Hb_002298_050 0.1320890859 - - serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_005841_040 0.1323498676 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
18 Hb_000239_030 0.1353543416 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
19 Hb_000373_180 0.1374989745 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
20 Hb_000035_440 0.137877646 - - -

Gene co-expression network

sample Hb_001052_030 Hb_001052_030 Hb_146225_010 Hb_146225_010 Hb_001052_030--Hb_146225_010 Hb_002045_230 Hb_002045_230 Hb_001052_030--Hb_002045_230 Hb_000094_110 Hb_000094_110 Hb_001052_030--Hb_000094_110 Hb_005841_050 Hb_005841_050 Hb_001052_030--Hb_005841_050 Hb_002918_140 Hb_002918_140 Hb_001052_030--Hb_002918_140 Hb_000123_160 Hb_000123_160 Hb_001052_030--Hb_000123_160 Hb_146225_010--Hb_005841_050 Hb_000264_020 Hb_000264_020 Hb_146225_010--Hb_000264_020 Hb_003326_020 Hb_003326_020 Hb_146225_010--Hb_003326_020 Hb_146225_010--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_002326_180 Hb_002326_180 Hb_002045_230--Hb_002326_180 Hb_005841_040 Hb_005841_040 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000352_140 Hb_000352_140 Hb_002045_230--Hb_000352_140 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130 Hb_003847_020 Hb_003847_020 Hb_000094_110--Hb_003847_020 Hb_000094_110--Hb_000175_130 Hb_000094_110--Hb_146225_010 Hb_001386_050 Hb_001386_050 Hb_000094_110--Hb_001386_050 Hb_000094_110--Hb_002918_140 Hb_002217_450 Hb_002217_450 Hb_005841_050--Hb_002217_450 Hb_001638_020 Hb_001638_020 Hb_005841_050--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_005841_050--Hb_001141_030 Hb_017862_010 Hb_017862_010 Hb_005841_050--Hb_017862_010 Hb_021409_090 Hb_021409_090 Hb_005841_050--Hb_021409_090 Hb_034585_050 Hb_034585_050 Hb_002918_140--Hb_034585_050 Hb_001863_420 Hb_001863_420 Hb_002918_140--Hb_001863_420 Hb_002918_140--Hb_001386_050 Hb_001017_070 Hb_001017_070 Hb_002918_140--Hb_001017_070 Hb_002918_140--Hb_017862_010 Hb_000676_240 Hb_000676_240 Hb_002918_140--Hb_000676_240 Hb_062135_020 Hb_062135_020 Hb_000123_160--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_000123_160--Hb_000976_250 Hb_000318_490 Hb_000318_490 Hb_000123_160--Hb_000318_490 Hb_000236_150 Hb_000236_150 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28446 1.82143 0.757164 1.39929 1.85321 3.20263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.34258 20.7903 10.9832 2.20512 0.47851

CAGE analysis