Hb_001052_040

Information

Type -
Description -
Location Contig1052: 97887-98357
Sequence    

Annotation

kegg
ID rcu:RCOM_1539220
description Ferredoxin-3, chloroplast precursor, putative
nr
ID XP_002515750.1
description Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P27788
description Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1
trembl
ID B9RPT1
description Ferredoxin-3, chloroplast, putative OS=Ricinus communis GN=RCOM_1539220 PE=4 SV=1
Gene Ontology
ID GO:0009055
description root r-b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01766: 96699-98571 , PASA_asmbl_01767: 96700-98800
cDNA
(Sanger)
(ID:Location)		 007_M15.ab1: 96702-98493 , 022_H14.ab1: 96699-98454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001052_040 0.0 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
2 Hb_015354_010 0.075618885 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_000886_060 0.1060570757 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
4 Hb_000152_670 0.1074435343 - - hypothetical protein VITISV_037603 [Vitis vinifera]
5 Hb_002742_080 0.1122952424 - - unknown [Populus trichocarpa]
6 Hb_001910_020 0.114288038 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
7 Hb_173178_020 0.1151688057 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
8 Hb_035318_010 0.1169567929 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
9 Hb_000939_060 0.1182580976 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
10 Hb_073973_160 0.1184611333 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
11 Hb_170487_010 0.1187275653 - - -
12 Hb_128376_010 0.1225599509 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_172141_010 0.1241909342 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
14 Hb_000787_170 0.1263663105 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
15 Hb_000336_270 0.1295011032 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
16 Hb_019813_010 0.1341712053 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
17 Hb_031091_010 0.1361513424 - - crooked neck protein, putative [Ricinus communis]
18 Hb_001946_300 0.1374341011 - - PREDICTED: F-box protein At-B [Jatropha curcas]
19 Hb_000261_290 0.1384595591 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
20 Hb_007403_050 0.1393692081 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001052_040 Hb_001052_040 Hb_015354_010 Hb_015354_010 Hb_001052_040--Hb_015354_010 Hb_000886_060 Hb_000886_060 Hb_001052_040--Hb_000886_060 Hb_000152_670 Hb_000152_670 Hb_001052_040--Hb_000152_670 Hb_002742_080 Hb_002742_080 Hb_001052_040--Hb_002742_080 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_173178_020 Hb_173178_020 Hb_001052_040--Hb_173178_020 Hb_003038_220 Hb_003038_220 Hb_015354_010--Hb_003038_220 Hb_015354_010--Hb_173178_020 Hb_015354_010--Hb_000152_670 Hb_142751_010 Hb_142751_010 Hb_015354_010--Hb_142751_010 Hb_015354_010--Hb_002742_080 Hb_073973_160 Hb_073973_160 Hb_000886_060--Hb_073973_160 Hb_010584_010 Hb_010584_010 Hb_000886_060--Hb_010584_010 Hb_002002_030 Hb_002002_030 Hb_000886_060--Hb_002002_030 Hb_000331_160 Hb_000331_160 Hb_000886_060--Hb_000331_160 Hb_000261_290 Hb_000261_290 Hb_000886_060--Hb_000261_290 Hb_128376_010 Hb_128376_010 Hb_000152_670--Hb_128376_010 Hb_000996_180 Hb_000996_180 Hb_000152_670--Hb_000996_180 Hb_004017_040 Hb_004017_040 Hb_000152_670--Hb_004017_040 Hb_009646_050 Hb_009646_050 Hb_000152_670--Hb_009646_050 Hb_005333_030 Hb_005333_030 Hb_002742_080--Hb_005333_030 Hb_003710_040 Hb_003710_040 Hb_002742_080--Hb_003710_040 Hb_002742_080--Hb_000261_290 Hb_002742_080--Hb_128376_010 Hb_002320_070 Hb_002320_070 Hb_002742_080--Hb_002320_070 Hb_035318_010 Hb_035318_010 Hb_001910_020--Hb_035318_010 Hb_000785_030 Hb_000785_030 Hb_001910_020--Hb_000785_030 Hb_152453_010 Hb_152453_010 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_001910_020--Hb_073973_160 Hb_001882_040 Hb_001882_040 Hb_001910_020--Hb_001882_040 Hb_001616_090 Hb_001616_090 Hb_173178_020--Hb_001616_090 Hb_031091_010 Hb_031091_010 Hb_173178_020--Hb_031091_010 Hb_003716_020 Hb_003716_020 Hb_173178_020--Hb_003716_020 Hb_000352_090 Hb_000352_090 Hb_173178_020--Hb_000352_090 Hb_009411_020 Hb_009411_020 Hb_173178_020--Hb_009411_020 Hb_008714_020 Hb_008714_020 Hb_173178_020--Hb_008714_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
670.147 547.504 237.639 381.212 463.71 808.001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
204.985 202.967 110.864 122.465 61.2103

CAGE analysis