Hb_001053_030

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig1053: 18662-24690
Sequence    

Annotation

kegg
ID rcu:RCOM_0968980
description Nuclear transcription factor Y subunit A-1, putative
nr
ID XP_012065570.1
description PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LXV5
description Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1
trembl
ID A0A067LH09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16766 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01776: 18757-19549 , PASA_asmbl_01777: 21323-24679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_030 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
2 Hb_124677_060 0.0755653562 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_000340_110 0.0898231931 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
4 Hb_002745_010 0.1005472477 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
5 Hb_000336_140 0.1014345706 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000243_380 0.1039976265 - - PREDICTED: histone H1 [Jatropha curcas]
7 Hb_144824_010 0.1065204336 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
8 Hb_164010_070 0.1068051087 - - Paramyosin, putative [Ricinus communis]
9 Hb_001348_150 0.1113269183 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
10 Hb_000140_070 0.1120169535 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
11 Hb_001220_030 0.1133556556 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
12 Hb_045046_010 0.1210910412 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
13 Hb_029223_050 0.1230008624 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
14 Hb_006316_070 0.1251116334 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
15 Hb_002813_010 0.1264763449 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
16 Hb_001902_060 0.1286866682 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
17 Hb_001059_100 0.1289073458 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
18 Hb_001189_130 0.1313224727 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
19 Hb_000441_070 0.131407124 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
20 Hb_076693_020 0.1321284669 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_001053_030 Hb_001053_030 Hb_124677_060 Hb_124677_060 Hb_001053_030--Hb_124677_060 Hb_000340_110 Hb_000340_110 Hb_001053_030--Hb_000340_110 Hb_002745_010 Hb_002745_010 Hb_001053_030--Hb_002745_010 Hb_000336_140 Hb_000336_140 Hb_001053_030--Hb_000336_140 Hb_000243_380 Hb_000243_380 Hb_001053_030--Hb_000243_380 Hb_144824_010 Hb_144824_010 Hb_001053_030--Hb_144824_010 Hb_124677_060--Hb_002745_010 Hb_001059_100 Hb_001059_100 Hb_124677_060--Hb_001059_100 Hb_000140_070 Hb_000140_070 Hb_124677_060--Hb_000140_070 Hb_001220_030 Hb_001220_030 Hb_124677_060--Hb_001220_030 Hb_124677_060--Hb_000340_110 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_000340_110--Hb_144824_010 Hb_002745_010--Hb_001220_030 Hb_076693_020 Hb_076693_020 Hb_002745_010--Hb_076693_020 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_002745_010--Hb_000140_070 Hb_001348_150 Hb_001348_150 Hb_002745_010--Hb_001348_150 Hb_000077_070 Hb_000077_070 Hb_000336_140--Hb_000077_070 Hb_000336_140--Hb_000140_070 Hb_045046_010 Hb_045046_010 Hb_000336_140--Hb_045046_010 Hb_003126_030 Hb_003126_030 Hb_000336_140--Hb_003126_030 Hb_003878_140 Hb_003878_140 Hb_000336_140--Hb_003878_140 Hb_002813_010 Hb_002813_010 Hb_000336_140--Hb_002813_010 Hb_000243_380--Hb_001511_110 Hb_000243_380--Hb_000340_110 Hb_000243_380--Hb_029223_050 Hb_000243_380--Hb_002745_010 Hb_000243_380--Hb_144824_010 Hb_000832_320 Hb_000832_320 Hb_144824_010--Hb_000832_320 Hb_144824_010--Hb_001511_110 Hb_005946_170 Hb_005946_170 Hb_144824_010--Hb_005946_170 Hb_144824_010--Hb_029223_050 Hb_164010_070 Hb_164010_070 Hb_144824_010--Hb_164010_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8887 49.3965 7.20009 4.44285 28.9494 20.8289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3708 14.8457 12.2648 11.7233 3.77322

CAGE analysis