Hb_001053_090

Information

Type transcription factor
Description TF Family: C3H
Location Contig1053: 72741-74987
Sequence    

Annotation

kegg
ID pop:POPTR_0001s27370g
description POPTRDRAFT_1068439; hypothetical protein
nr
ID XP_012065564.1
description PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
swissprot
ID P93755
description Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2
trembl
ID A0A067L895
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16760 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01782: 71198-75592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_090 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
2 Hb_000964_130 0.0993005344 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
3 Hb_000025_790 0.0998048661 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
4 Hb_003647_060 0.1141883806 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
5 Hb_012490_080 0.1215854125 - - threonine synthase, putative [Ricinus communis]
6 Hb_010222_070 0.1230991753 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
7 Hb_002307_270 0.1268153627 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
8 Hb_002007_160 0.132718486 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
9 Hb_074783_010 0.1328994377 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
10 Hb_005396_150 0.1330832119 - - protein binding protein, putative [Ricinus communis]
11 Hb_001999_090 0.1337410556 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
12 Hb_002153_030 0.1343233297 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
13 Hb_022250_090 0.1346956886 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
14 Hb_001170_030 0.1351676552 - - synaptonemal complex protein, putative [Ricinus communis]
15 Hb_007508_090 0.138188365 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
16 Hb_000866_120 0.1392099512 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
17 Hb_002391_210 0.1401132397 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
18 Hb_001411_140 0.1414636028 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
19 Hb_000230_390 0.1426909356 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
20 Hb_002235_040 0.1434502132 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]

Gene co-expression network

sample Hb_001053_090 Hb_001053_090 Hb_000964_130 Hb_000964_130 Hb_001053_090--Hb_000964_130 Hb_000025_790 Hb_000025_790 Hb_001053_090--Hb_000025_790 Hb_003647_060 Hb_003647_060 Hb_001053_090--Hb_003647_060 Hb_012490_080 Hb_012490_080 Hb_001053_090--Hb_012490_080 Hb_010222_070 Hb_010222_070 Hb_001053_090--Hb_010222_070 Hb_002307_270 Hb_002307_270 Hb_001053_090--Hb_002307_270 Hb_000808_030 Hb_000808_030 Hb_000964_130--Hb_000808_030 Hb_001999_090 Hb_001999_090 Hb_000964_130--Hb_001999_090 Hb_000866_120 Hb_000866_120 Hb_000964_130--Hb_000866_120 Hb_003747_100 Hb_003747_100 Hb_000964_130--Hb_003747_100 Hb_000017_220 Hb_000017_220 Hb_000964_130--Hb_000017_220 Hb_002007_160 Hb_002007_160 Hb_000964_130--Hb_002007_160 Hb_000002_010 Hb_000002_010 Hb_000025_790--Hb_000002_010 Hb_000025_790--Hb_000964_130 Hb_000111_290 Hb_000111_290 Hb_000025_790--Hb_000111_290 Hb_010863_010 Hb_010863_010 Hb_000025_790--Hb_010863_010 Hb_000025_790--Hb_012490_080 Hb_000614_240 Hb_000614_240 Hb_000025_790--Hb_000614_240 Hb_074783_010 Hb_074783_010 Hb_003647_060--Hb_074783_010 Hb_007508_090 Hb_007508_090 Hb_003647_060--Hb_007508_090 Hb_001021_130 Hb_001021_130 Hb_003647_060--Hb_001021_130 Hb_000646_050 Hb_000646_050 Hb_003647_060--Hb_000646_050 Hb_005396_150 Hb_005396_150 Hb_003647_060--Hb_005396_150 Hb_000710_060 Hb_000710_060 Hb_003647_060--Hb_000710_060 Hb_000107_490 Hb_000107_490 Hb_012490_080--Hb_000107_490 Hb_000406_140 Hb_000406_140 Hb_012490_080--Hb_000406_140 Hb_006938_080 Hb_006938_080 Hb_012490_080--Hb_006938_080 Hb_000866_170 Hb_000866_170 Hb_012490_080--Hb_000866_170 Hb_000890_210 Hb_000890_210 Hb_012490_080--Hb_000890_210 Hb_012490_080--Hb_000646_050 Hb_003768_050 Hb_003768_050 Hb_010222_070--Hb_003768_050 Hb_000024_040 Hb_000024_040 Hb_010222_070--Hb_000024_040 Hb_001217_050 Hb_001217_050 Hb_010222_070--Hb_001217_050 Hb_010222_070--Hb_002007_160 Hb_000347_390 Hb_000347_390 Hb_010222_070--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_010222_070--Hb_002234_090 Hb_000836_380 Hb_000836_380 Hb_002307_270--Hb_000836_380 Hb_001411_140 Hb_001411_140 Hb_002307_270--Hb_001411_140 Hb_002307_270--Hb_000964_130 Hb_001405_160 Hb_001405_160 Hb_002307_270--Hb_001405_160 Hb_002307_270--Hb_001217_050 Hb_000173_470 Hb_000173_470 Hb_002307_270--Hb_000173_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8074 66.3008 11.2153 31.6195 11.7206 21.439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.078 25.1457 57.092 54.9406 34.3717

CAGE analysis