Hb_001053_120

Information

Type transcription factor
Description TF Family: MYB
Location Contig1053: 103253-105590
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06630g
description POPTRDRAFT_804434; hypothetical protein
nr
ID XP_011047407.1
description PREDICTED: transcription factor MYB46-like [Populus euphratica]
swissprot
ID Q9LXV2
description Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1
trembl
ID A0A067LFZ9
description MYB family protein OS=Jatropha curcas GN=JCGZ_16757 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb46-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_120 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
2 Hb_009158_040 0.0238698369 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
3 Hb_001163_010 0.0412449322 - - PREDICTED: syncoilin [Jatropha curcas]
4 Hb_002170_030 0.048076533 - - PREDICTED: laccase-4-like [Jatropha curcas]
5 Hb_023342_010 0.049516356 - - -
6 Hb_000029_210 0.0579799818 - - protein binding protein, putative [Ricinus communis]
7 Hb_026198_080 0.0582893371 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
8 Hb_000023_100 0.0612069551 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
9 Hb_008705_080 0.0616770005 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
10 Hb_006351_090 0.0639332158 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
11 Hb_008518_060 0.0654398028 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
12 Hb_001097_170 0.0714994401 - - PREDICTED: protein NDR1 [Jatropha curcas]
13 Hb_000427_020 0.0729648019 - - PsbA, partial [Dianthus pygmaeus]
14 Hb_000580_200 0.0759625416 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
15 Hb_001097_030 0.080369305 - - nuclear transport factor, putative [Ricinus communis]
16 Hb_003549_100 0.082450153 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
17 Hb_151290_010 0.08427317 - - unnamed protein product [Vitis vinifera]
18 Hb_000416_020 0.0845792179 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000563_520 0.092007063 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_005062_100 0.0940476785 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001053_120 Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_001053_120--Hb_009158_040 Hb_001163_010 Hb_001163_010 Hb_001053_120--Hb_001163_010 Hb_002170_030 Hb_002170_030 Hb_001053_120--Hb_002170_030 Hb_023342_010 Hb_023342_010 Hb_001053_120--Hb_023342_010 Hb_000029_210 Hb_000029_210 Hb_001053_120--Hb_000029_210 Hb_026198_080 Hb_026198_080 Hb_001053_120--Hb_026198_080 Hb_009158_040--Hb_002170_030 Hb_009158_040--Hb_026198_080 Hb_009158_040--Hb_023342_010 Hb_006351_090 Hb_006351_090 Hb_009158_040--Hb_006351_090 Hb_009158_040--Hb_001163_010 Hb_001163_010--Hb_000029_210 Hb_008518_060 Hb_008518_060 Hb_001163_010--Hb_008518_060 Hb_000427_020 Hb_000427_020 Hb_001163_010--Hb_000427_020 Hb_001163_010--Hb_002170_030 Hb_002170_030--Hb_023342_010 Hb_002170_030--Hb_006351_090 Hb_008705_080 Hb_008705_080 Hb_002170_030--Hb_008705_080 Hb_002170_030--Hb_026198_080 Hb_000023_100 Hb_000023_100 Hb_023342_010--Hb_000023_100 Hb_023342_010--Hb_026198_080 Hb_023342_010--Hb_000029_210 Hb_000029_210--Hb_008518_060 Hb_005062_100 Hb_005062_100 Hb_000029_210--Hb_005062_100 Hb_001097_030 Hb_001097_030 Hb_000029_210--Hb_001097_030 Hb_026198_080--Hb_008705_080 Hb_002311_010 Hb_002311_010 Hb_026198_080--Hb_002311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.020846 0.156213 1.15413 7.39346 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0301441 9.78164

CAGE analysis