Hb_001053_130

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1053: 111684-114868
Sequence    

Annotation

kegg
ID rcu:RCOM_1451930
description hypothetical protein
nr
ID XP_002513023.1
description hypothetical protein RCOM_1451930 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RG71
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1451930 PE=4 SV=1
Gene Ontology
ID GO:0005739
description hypothetical protein RCOM_1451930

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01791: 115644-119283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_130 0.0 transcription factor TF Family: mTERF hypothetical protein RCOM_1451930 [Ricinus communis]
2 Hb_000454_130 0.0785940257 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
3 Hb_001754_030 0.0935287885 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
4 Hb_003929_280 0.0943875664 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
5 Hb_000527_010 0.0957916075 - - katanin P80 subunit, putative [Ricinus communis]
6 Hb_012305_030 0.0968930209 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
7 Hb_000809_160 0.0997197077 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
8 Hb_005288_170 0.0999302693 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
9 Hb_003927_040 0.1001779569 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
10 Hb_003866_080 0.1003197603 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
11 Hb_001089_050 0.1018809558 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
12 Hb_000019_050 0.1023533831 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
13 Hb_003929_070 0.103107098 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
14 Hb_002477_250 0.1031151866 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
15 Hb_004870_050 0.1044015754 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
16 Hb_031641_010 0.1044977217 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002085_030 0.1044989037 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
18 Hb_030827_020 0.1048724538 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
19 Hb_003117_020 0.1052205352 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
20 Hb_001751_140 0.1054066865 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001053_130 Hb_001053_130 Hb_000454_130 Hb_000454_130 Hb_001053_130--Hb_000454_130 Hb_001754_030 Hb_001754_030 Hb_001053_130--Hb_001754_030 Hb_003929_280 Hb_003929_280 Hb_001053_130--Hb_003929_280 Hb_000527_010 Hb_000527_010 Hb_001053_130--Hb_000527_010 Hb_012305_030 Hb_012305_030 Hb_001053_130--Hb_012305_030 Hb_000809_160 Hb_000809_160 Hb_001053_130--Hb_000809_160 Hb_000087_060 Hb_000087_060 Hb_000454_130--Hb_000087_060 Hb_001089_050 Hb_001089_050 Hb_000454_130--Hb_001089_050 Hb_003927_040 Hb_003927_040 Hb_000454_130--Hb_003927_040 Hb_002492_010 Hb_002492_010 Hb_000454_130--Hb_002492_010 Hb_001716_020 Hb_001716_020 Hb_000454_130--Hb_001716_020 Hb_002028_210 Hb_002028_210 Hb_000454_130--Hb_002028_210 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_023226_070 Hb_023226_070 Hb_001754_030--Hb_023226_070 Hb_060094_020 Hb_060094_020 Hb_001754_030--Hb_060094_020 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_000723_110 Hb_000723_110 Hb_001754_030--Hb_000723_110 Hb_004236_050 Hb_004236_050 Hb_003929_280--Hb_004236_050 Hb_004837_180 Hb_004837_180 Hb_003929_280--Hb_004837_180 Hb_003929_280--Hb_003927_040 Hb_012384_030 Hb_012384_030 Hb_003929_280--Hb_012384_030 Hb_000803_070 Hb_000803_070 Hb_003929_280--Hb_000803_070 Hb_002217_110 Hb_002217_110 Hb_003929_280--Hb_002217_110 Hb_000527_010--Hb_012305_030 Hb_008568_020 Hb_008568_020 Hb_000527_010--Hb_008568_020 Hb_004976_010 Hb_004976_010 Hb_000527_010--Hb_004976_010 Hb_055235_020 Hb_055235_020 Hb_000527_010--Hb_055235_020 Hb_004020_040 Hb_004020_040 Hb_000527_010--Hb_004020_040 Hb_140049_040 Hb_140049_040 Hb_000527_010--Hb_140049_040 Hb_002085_030 Hb_002085_030 Hb_012305_030--Hb_002085_030 Hb_012305_030--Hb_140049_040 Hb_012305_030--Hb_004976_010 Hb_012305_030--Hb_004236_050 Hb_000914_120 Hb_000914_120 Hb_012305_030--Hb_000914_120 Hb_012194_030 Hb_012194_030 Hb_012305_030--Hb_012194_030 Hb_000094_090 Hb_000094_090 Hb_000809_160--Hb_000094_090 Hb_000809_160--Hb_002477_250 Hb_031641_010 Hb_031641_010 Hb_000809_160--Hb_031641_010 Hb_000866_450 Hb_000866_450 Hb_000809_160--Hb_000866_450 Hb_000120_910 Hb_000120_910 Hb_000809_160--Hb_000120_910 Hb_000363_120 Hb_000363_120 Hb_000809_160--Hb_000363_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.3783 4.17617 2.91153 3.02413 1.99724 2.40225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13906 2.87345 1.4389 1.48452 2.6256

CAGE analysis