Hb_001053_150

Information

Type -
Description -
Location Contig1053: 120515-123866
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01793: 120669-123289 , PASA_asmbl_01795: 123732-123857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_150 0.0 - - -
2 Hb_002078_480 0.1250906392 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
3 Hb_001035_070 0.1464828206 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
4 Hb_004429_070 0.1472046116 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
5 Hb_000010_410 0.1554631158 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
6 Hb_000963_140 0.1566870685 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_006472_050 0.158031673 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
8 Hb_092107_010 0.1606912485 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002182_030 0.1613817258 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
10 Hb_000976_360 0.1655350492 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
11 Hb_001159_080 0.1682373285 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
12 Hb_002756_020 0.1703782766 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
13 Hb_011316_020 0.1736027569 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
14 Hb_002290_040 0.1748648837 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003551_050 0.1750972349 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
16 Hb_002239_060 0.175595865 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
17 Hb_100804_010 0.1757181002 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
18 Hb_004056_030 0.1772379356 - - hypothetical protein 33 [Hevea brasiliensis]
19 Hb_003117_010 0.1793240247 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
20 Hb_000260_210 0.1816880623 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001053_150 Hb_001053_150 Hb_002078_480 Hb_002078_480 Hb_001053_150--Hb_002078_480 Hb_001035_070 Hb_001035_070 Hb_001053_150--Hb_001035_070 Hb_004429_070 Hb_004429_070 Hb_001053_150--Hb_004429_070 Hb_000010_410 Hb_000010_410 Hb_001053_150--Hb_000010_410 Hb_000963_140 Hb_000963_140 Hb_001053_150--Hb_000963_140 Hb_006472_050 Hb_006472_050 Hb_001053_150--Hb_006472_050 Hb_002078_480--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_002078_480--Hb_004324_050 Hb_003117_010 Hb_003117_010 Hb_002078_480--Hb_003117_010 Hb_002078_480--Hb_000963_140 Hb_012423_050 Hb_012423_050 Hb_002078_480--Hb_012423_050 Hb_001035_070--Hb_004429_070 Hb_000141_030 Hb_000141_030 Hb_001035_070--Hb_000141_030 Hb_001277_090 Hb_001277_090 Hb_001035_070--Hb_001277_090 Hb_001035_070--Hb_002078_480 Hb_029510_040 Hb_029510_040 Hb_001035_070--Hb_029510_040 Hb_002756_020 Hb_002756_020 Hb_004429_070--Hb_002756_020 Hb_002290_040 Hb_002290_040 Hb_004429_070--Hb_002290_040 Hb_011360_080 Hb_011360_080 Hb_004429_070--Hb_011360_080 Hb_004429_070--Hb_004324_050 Hb_000327_220 Hb_000327_220 Hb_004429_070--Hb_000327_220 Hb_004429_070--Hb_000141_030 Hb_002239_060 Hb_002239_060 Hb_000010_410--Hb_002239_060 Hb_005060_020 Hb_005060_020 Hb_000010_410--Hb_005060_020 Hb_005224_010 Hb_005224_010 Hb_000010_410--Hb_005224_010 Hb_005489_100 Hb_005489_100 Hb_000010_410--Hb_005489_100 Hb_001222_050 Hb_001222_050 Hb_000010_410--Hb_001222_050 Hb_000099_130 Hb_000099_130 Hb_000963_140--Hb_000099_130 Hb_000963_140--Hb_000141_030 Hb_001159_080 Hb_001159_080 Hb_000963_140--Hb_001159_080 Hb_000836_130 Hb_000836_130 Hb_000963_140--Hb_000836_130 Hb_001135_210 Hb_001135_210 Hb_000963_140--Hb_001135_210 Hb_003581_260 Hb_003581_260 Hb_000963_140--Hb_003581_260 Hb_002182_030 Hb_002182_030 Hb_006472_050--Hb_002182_030 Hb_006472_050--Hb_001135_210 Hb_000963_180 Hb_000963_180 Hb_006472_050--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_006472_050--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_006472_050--Hb_000046_290 Hb_001153_060 Hb_001153_060 Hb_006472_050--Hb_001153_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3711 0.164198 0.468967 3.56234 1.39639 3.91676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.59243 8.30903 18.6823 2.13896 1.93705

CAGE analysis