Hb_001053_200

Information

Type -
Description -
Location Contig1053: 154805-177868
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012072750.1
description PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
swissprot
ID Q8AVI4
description Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1
trembl
ID A0A067KN28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01800: 161654-162379 , PASA_asmbl_01801: 168227-169786 , PASA_asmbl_01802: 168227-169122 , PASA_asmbl_01803: 170085-173912 , PASA_asmbl_01804: 169382-169876 , PASA_asmbl_01806: 163383-177915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_200 0.0 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
2 Hb_008103_100 0.0868059343 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
3 Hb_001662_170 0.0931594364 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
4 Hb_001951_240 0.0999133995 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
5 Hb_000649_300 0.1050700068 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
6 Hb_005496_160 0.1094767805 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
7 Hb_004032_310 0.1096338717 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
8 Hb_003752_120 0.1106958329 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
9 Hb_004106_010 0.1138925399 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
10 Hb_012787_040 0.1145680671 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
11 Hb_002073_020 0.1186183294 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
12 Hb_003216_050 0.1187258543 - - PREDICTED: OBERON-like protein [Jatropha curcas]
13 Hb_001409_050 0.1233715557 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_158696_010 0.125622381 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
15 Hb_000613_220 0.127734967 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_002910_010 0.1280662427 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
17 Hb_011360_090 0.1300811697 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
18 Hb_000803_060 0.1302815944 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
19 Hb_002477_120 0.132087052 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
20 Hb_002534_050 0.1335006715 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]

Gene co-expression network

sample Hb_001053_200 Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_001053_200--Hb_008103_100 Hb_001662_170 Hb_001662_170 Hb_001053_200--Hb_001662_170 Hb_001951_240 Hb_001951_240 Hb_001053_200--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_001053_200--Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_001053_200--Hb_005496_160 Hb_004032_310 Hb_004032_310 Hb_001053_200--Hb_004032_310 Hb_008103_100--Hb_001662_170 Hb_012787_040 Hb_012787_040 Hb_008103_100--Hb_012787_040 Hb_004106_010 Hb_004106_010 Hb_008103_100--Hb_004106_010 Hb_003216_050 Hb_003216_050 Hb_008103_100--Hb_003216_050 Hb_000803_060 Hb_000803_060 Hb_008103_100--Hb_000803_060 Hb_001662_170--Hb_004106_010 Hb_001662_170--Hb_012787_040 Hb_001662_170--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_000732_230 Hb_000732_230 Hb_001951_240--Hb_000732_230 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001951_240--Hb_000649_300 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_002073_020 Hb_002073_020 Hb_001951_240--Hb_002073_020 Hb_000649_300--Hb_005496_160 Hb_002874_170 Hb_002874_170 Hb_000649_300--Hb_002874_170 Hb_002910_010 Hb_002910_010 Hb_000649_300--Hb_002910_010 Hb_000649_300--Hb_002073_020 Hb_002154_020 Hb_002154_020 Hb_005496_160--Hb_002154_020 Hb_007849_050 Hb_007849_050 Hb_005496_160--Hb_007849_050 Hb_007007_080 Hb_007007_080 Hb_005496_160--Hb_007007_080 Hb_005496_160--Hb_001951_240 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26915 10.1713 4.02326 3.05038 1.15451 0.675425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.366686 0.327039 0.387361 2.6568 2.07843

CAGE analysis