Hb_001053_210

Information

Type -
Description -
Location Contig1053: 193685-196905
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01808: 194780-195582 , PASA_asmbl_01809: 196185-196744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_210 0.0 - - -
2 Hb_000740_090 0.0720401587 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000940_210 0.1148544891 - - cyclophilin [Hevea brasiliensis]
4 Hb_003430_080 0.1320268978 - - zinc finger protein, putative [Ricinus communis]
5 Hb_023226_030 0.1354723396 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
6 Hb_147245_010 0.1377613938 - - casein kinase, putative [Ricinus communis]
7 Hb_011457_130 0.1413561797 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
8 Hb_002374_270 0.1442566561 - - conserved hypothetical protein [Ricinus communis]
9 Hb_034507_060 0.1452265044 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
10 Hb_000917_240 0.1465103838 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
11 Hb_000581_030 0.1475313669 - - conserved hypothetical protein [Ricinus communis]
12 Hb_172706_020 0.1532785507 - - PREDICTED: protein ABIL2 [Jatropha curcas]
13 Hb_002235_060 0.1547556988 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
14 Hb_001545_130 0.1574306422 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
15 Hb_001054_090 0.1579093305 - - Potassium channel SKOR, putative [Ricinus communis]
16 Hb_007192_050 0.1591206944 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
17 Hb_000003_030 0.1602853466 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_005694_180 0.1622478148 - - PREDICTED: cytochrome b5 [Jatropha curcas]
19 Hb_047583_010 0.1660528348 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
20 Hb_004958_010 0.1668146939 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001053_210 Hb_001053_210 Hb_000740_090 Hb_000740_090 Hb_001053_210--Hb_000740_090 Hb_000940_210 Hb_000940_210 Hb_001053_210--Hb_000940_210 Hb_003430_080 Hb_003430_080 Hb_001053_210--Hb_003430_080 Hb_023226_030 Hb_023226_030 Hb_001053_210--Hb_023226_030 Hb_147245_010 Hb_147245_010 Hb_001053_210--Hb_147245_010 Hb_011457_130 Hb_011457_130 Hb_001053_210--Hb_011457_130 Hb_000740_090--Hb_003430_080 Hb_000740_090--Hb_147245_010 Hb_001545_130 Hb_001545_130 Hb_000740_090--Hb_001545_130 Hb_000740_090--Hb_000940_210 Hb_034507_060 Hb_034507_060 Hb_000740_090--Hb_034507_060 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_000940_210--Hb_003430_080 Hb_005694_180 Hb_005694_180 Hb_003430_080--Hb_005694_180 Hb_000003_030 Hb_000003_030 Hb_003430_080--Hb_000003_030 Hb_001195_420 Hb_001195_420 Hb_003430_080--Hb_001195_420 Hb_003430_080--Hb_023226_030 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_023226_030--Hb_034507_060 Hb_023226_030--Hb_172706_020 Hb_023226_030--Hb_005694_180 Hb_000309_030 Hb_000309_030 Hb_023226_030--Hb_000309_030 Hb_023226_030--Hb_001195_420 Hb_002235_060 Hb_002235_060 Hb_147245_010--Hb_002235_060 Hb_147245_010--Hb_001545_130 Hb_007537_030 Hb_007537_030 Hb_147245_010--Hb_007537_030 Hb_000928_120 Hb_000928_120 Hb_147245_010--Hb_000928_120 Hb_004109_050 Hb_004109_050 Hb_147245_010--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_147245_010--Hb_000152_710 Hb_011457_130--Hb_005694_180 Hb_011457_130--Hb_003430_080 Hb_011457_130--Hb_000740_090 Hb_011457_130--Hb_000940_210 Hb_011457_130--Hb_000003_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.643171 1.15056 1.78371 4.17388 0.252054 0.22018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.521734 0.615178 0.121225 1.47747 0.671477

CAGE analysis