Hb_001054_020

Information

Type -
Description -
Location Contig1054: 56745-59298
Sequence    

Annotation

kegg
ID tcc:TCM_017447
description Glutamine synthase clone R1, 1,ATGLN1,1 isoform 1
nr
ID AAB61597.1
description glutamine synthetase [Hevea brasiliensis]
swissprot
ID P32289
description Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1
trembl
ID O22331
description Glutamine synthetase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0004356
description glutamine synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01822: 56874-59440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_020 0.0 - - glutamine synthetase [Hevea brasiliensis]
2 Hb_003549_150 0.0942122703 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
3 Hb_000256_190 0.0953838925 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
4 Hb_004310_020 0.1026244068 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
5 Hb_000523_040 0.1034232457 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
6 Hb_158062_010 0.1077250754 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
7 Hb_135831_010 0.1111792602 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
8 Hb_002783_240 0.1114188643 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
9 Hb_034552_030 0.1117024878 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
10 Hb_028285_010 0.1137709775 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
11 Hb_000205_300 0.1150392949 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
12 Hb_004631_180 0.1153942458 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
13 Hb_006916_040 0.1158065226 - - 60S ribosomal protein L7a, putative [Ricinus communis]
14 Hb_007059_010 0.1159894996 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
15 Hb_001135_130 0.1164963574 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
16 Hb_000120_430 0.1172043804 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
17 Hb_000982_060 0.1175860731 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
18 Hb_010712_030 0.1176279427 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000617_100 0.1181596611 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
20 Hb_000146_050 0.1207505832 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_001054_020 Hb_001054_020 Hb_003549_150 Hb_003549_150 Hb_001054_020--Hb_003549_150 Hb_000256_190 Hb_000256_190 Hb_001054_020--Hb_000256_190 Hb_004310_020 Hb_004310_020 Hb_001054_020--Hb_004310_020 Hb_000523_040 Hb_000523_040 Hb_001054_020--Hb_000523_040 Hb_158062_010 Hb_158062_010 Hb_001054_020--Hb_158062_010 Hb_135831_010 Hb_135831_010 Hb_001054_020--Hb_135831_010 Hb_007416_300 Hb_007416_300 Hb_003549_150--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003549_150--Hb_010381_090 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_001051_080 Hb_001051_080 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040 Hb_006916_040 Hb_006916_040 Hb_000256_190--Hb_006916_040 Hb_001347_040 Hb_001347_040 Hb_000256_190--Hb_001347_040 Hb_004631_180 Hb_004631_180 Hb_000256_190--Hb_004631_180 Hb_112798_020 Hb_112798_020 Hb_000256_190--Hb_112798_020 Hb_003124_220 Hb_003124_220 Hb_000256_190--Hb_003124_220 Hb_000256_190--Hb_003549_150 Hb_010712_030 Hb_010712_030 Hb_004310_020--Hb_010712_030 Hb_000205_300 Hb_000205_300 Hb_004310_020--Hb_000205_300 Hb_004310_020--Hb_158062_010 Hb_001135_130 Hb_001135_130 Hb_004310_020--Hb_001135_130 Hb_004310_020--Hb_001051_080 Hb_004310_020--Hb_003549_150 Hb_006586_050 Hb_006586_050 Hb_000523_040--Hb_006586_050 Hb_000523_040--Hb_000256_190 Hb_080313_010 Hb_080313_010 Hb_000523_040--Hb_080313_010 Hb_000521_260 Hb_000521_260 Hb_000523_040--Hb_000521_260 Hb_000366_120 Hb_000366_120 Hb_000523_040--Hb_000366_120 Hb_002304_090 Hb_002304_090 Hb_000523_040--Hb_002304_090 Hb_158062_010--Hb_000205_300 Hb_007059_010 Hb_007059_010 Hb_158062_010--Hb_007059_010 Hb_000146_050 Hb_000146_050 Hb_158062_010--Hb_000146_050 Hb_003964_070 Hb_003964_070 Hb_158062_010--Hb_003964_070 Hb_158062_010--Hb_003549_150 Hb_000982_060 Hb_000982_060 Hb_135831_010--Hb_000982_060 Hb_000120_170 Hb_000120_170 Hb_135831_010--Hb_000120_170 Hb_135831_010--Hb_003549_150 Hb_002876_320 Hb_002876_320 Hb_135831_010--Hb_002876_320 Hb_135831_010--Hb_007416_300 Hb_000009_400 Hb_000009_400 Hb_135831_010--Hb_000009_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.5973 29.4722 21.3651 45.454 43.5941 33.571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.5495 24.1102 24.169 27.1113 4.68141

CAGE analysis