Hb_001054_030

Information

Type transcription factor
Description TF Family: NF-X1
Location Contig1054: 62991-67018
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04070g
description POPTRDRAFT_569357; NF-X1 type zinc finger family protein
nr
ID XP_012087618.1
description PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
swissprot
ID Q9SY59
description NF-X1-type zinc finger protein NFXL1 OS=Arabidopsis thaliana GN=NFXL1 PE=2 SV=1
trembl
ID A0A067JXU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25309 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nf-x-like 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01823: 63199-67233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_030 0.0 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
2 Hb_000260_640 0.0570664517 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
3 Hb_002253_080 0.0660114593 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
4 Hb_003729_030 0.0676749891 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
5 Hb_000291_090 0.0727182645 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X2 [Jatropha curcas]
6 Hb_006117_080 0.0777637765 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
7 Hb_000321_150 0.0796346493 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
8 Hb_010712_090 0.0804755045 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
9 Hb_000069_470 0.0805919478 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
10 Hb_002615_090 0.0831682438 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_011242_060 0.0833853417 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
12 Hb_002006_040 0.0844343551 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
13 Hb_008253_030 0.08499798 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
14 Hb_001322_130 0.0853899558 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
15 Hb_031042_050 0.0877197779 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
16 Hb_000402_230 0.0880762532 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
17 Hb_000331_330 0.0886786083 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
18 Hb_000174_290 0.088896762 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
19 Hb_001277_300 0.0895516693 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
20 Hb_000780_170 0.0896256993 - - PREDICTED: OBERON-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001054_030 Hb_001054_030 Hb_000260_640 Hb_000260_640 Hb_001054_030--Hb_000260_640 Hb_002253_080 Hb_002253_080 Hb_001054_030--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_001054_030--Hb_003729_030 Hb_000291_090 Hb_000291_090 Hb_001054_030--Hb_000291_090 Hb_006117_080 Hb_006117_080 Hb_001054_030--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_001054_030--Hb_000321_150 Hb_000260_640--Hb_006117_080 Hb_000260_640--Hb_002253_080 Hb_000260_640--Hb_000321_150 Hb_000661_200 Hb_000661_200 Hb_000260_640--Hb_000661_200 Hb_000260_640--Hb_003729_030 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002267_140 Hb_002267_140 Hb_002253_080--Hb_002267_140 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090 Hb_003729_030--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_003729_030--Hb_000069_470 Hb_003729_030--Hb_002253_080 Hb_000120_660 Hb_000120_660 Hb_003729_030--Hb_000120_660 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060 Hb_000453_060 Hb_000453_060 Hb_000291_090--Hb_000453_060 Hb_032808_030 Hb_032808_030 Hb_000291_090--Hb_032808_030 Hb_000009_500 Hb_000009_500 Hb_000291_090--Hb_000009_500 Hb_002006_040 Hb_002006_040 Hb_000291_090--Hb_002006_040 Hb_002960_080 Hb_002960_080 Hb_000291_090--Hb_002960_080 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9042 47.956 14.1651 22.9141 27.0831 30.2516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4364 15.0997 19.5074 15.2536 19.4656

CAGE analysis