Hb_001054_100

Information

Type -
Description -
Location Contig1054: 147970-152934
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03970g
description POPTRDRAFT_834190; hypothetical protein
nr
ID XP_012072919.1
description PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07951 PE=4 SV=1
Gene Ontology
ID GO:0005783
description b-cell receptor-associated-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01834: 147966-153170
cDNA
(Sanger)
(ID:Location)		 004_F21.ab1: 148039-152968 , 008_P13.ab1: 147966-152947 , 015_G02.ab1: 147970-152968 , 033_J07.ab1: 148056-152995 , 039_C03.ab1: 148056-152935

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_100 0.0 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
2 Hb_000122_020 0.0923960623 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
3 Hb_001824_010 0.0973283773 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
4 Hb_130235_010 0.0976716918 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
5 Hb_008695_050 0.1009532127 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005307_050 0.1044224571 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
7 Hb_017491_060 0.1055361408 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
8 Hb_001136_010 0.1066793758 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
9 Hb_009113_050 0.1085751298 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
10 Hb_001307_090 0.1089793197 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
11 Hb_004672_010 0.1117288802 - - ecotropic viral integration site, putative [Ricinus communis]
12 Hb_000834_030 0.1128176867 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
13 Hb_005137_060 0.1130911311 - - -
14 Hb_000496_120 0.114862443 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
15 Hb_000028_350 0.1156628381 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
16 Hb_005463_140 0.1157408369 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
17 Hb_000896_040 0.1157567039 - - BnaC02g13240D [Brassica napus]
18 Hb_008699_020 0.1160862717 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
19 Hb_005914_010 0.1162348186 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
20 Hb_001005_080 0.1170410094 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001054_100 Hb_001054_100 Hb_000122_020 Hb_000122_020 Hb_001054_100--Hb_000122_020 Hb_001824_010 Hb_001824_010 Hb_001054_100--Hb_001824_010 Hb_130235_010 Hb_130235_010 Hb_001054_100--Hb_130235_010 Hb_008695_050 Hb_008695_050 Hb_001054_100--Hb_008695_050 Hb_005307_050 Hb_005307_050 Hb_001054_100--Hb_005307_050 Hb_017491_060 Hb_017491_060 Hb_001054_100--Hb_017491_060 Hb_004449_200 Hb_004449_200 Hb_000122_020--Hb_004449_200 Hb_002631_020 Hb_002631_020 Hb_000122_020--Hb_002631_020 Hb_001307_090 Hb_001307_090 Hb_000122_020--Hb_001307_090 Hb_003018_050 Hb_003018_050 Hb_000122_020--Hb_003018_050 Hb_001461_010 Hb_001461_010 Hb_000122_020--Hb_001461_010 Hb_004659_060 Hb_004659_060 Hb_000122_020--Hb_004659_060 Hb_008695_040 Hb_008695_040 Hb_001824_010--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_001824_010--Hb_001421_060 Hb_076693_030 Hb_076693_030 Hb_001824_010--Hb_076693_030 Hb_002596_040 Hb_002596_040 Hb_001824_010--Hb_002596_040 Hb_000840_190 Hb_000840_190 Hb_001824_010--Hb_000840_190 Hb_008699_020 Hb_008699_020 Hb_001824_010--Hb_008699_020 Hb_130235_010--Hb_003018_050 Hb_004125_110 Hb_004125_110 Hb_130235_010--Hb_004125_110 Hb_007735_030 Hb_007735_030 Hb_130235_010--Hb_007735_030 Hb_140543_010 Hb_140543_010 Hb_130235_010--Hb_140543_010 Hb_001754_070 Hb_001754_070 Hb_130235_010--Hb_001754_070 Hb_001057_040 Hb_001057_040 Hb_008695_050--Hb_001057_040 Hb_001653_020 Hb_001653_020 Hb_008695_050--Hb_001653_020 Hb_008695_050--Hb_005307_050 Hb_000207_400 Hb_000207_400 Hb_008695_050--Hb_000207_400 Hb_000414_130 Hb_000414_130 Hb_008695_050--Hb_000414_130 Hb_007928_030 Hb_007928_030 Hb_008695_050--Hb_007928_030 Hb_000808_190 Hb_000808_190 Hb_005307_050--Hb_000808_190 Hb_005307_050--Hb_007928_030 Hb_186982_040 Hb_186982_040 Hb_005307_050--Hb_186982_040 Hb_000212_290 Hb_000212_290 Hb_005307_050--Hb_000212_290 Hb_001242_140 Hb_001242_140 Hb_005307_050--Hb_001242_140 Hb_143496_010 Hb_143496_010 Hb_017491_060--Hb_143496_010 Hb_006541_010 Hb_006541_010 Hb_017491_060--Hb_006541_010 Hb_007065_010 Hb_007065_010 Hb_017491_060--Hb_007065_010 Hb_017413_010 Hb_017413_010 Hb_017491_060--Hb_017413_010 Hb_001616_040 Hb_001616_040 Hb_017491_060--Hb_001616_040 Hb_004157_030 Hb_004157_030 Hb_017491_060--Hb_004157_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9762 16.9076 26.6636 86.9066 36.671 65.69
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
151.956 154.374 84.5938 102.713 30.7013

CAGE analysis