Hb_001054_120

Information

Type -
Description -
Location Contig1054: 159583-171949
Sequence    

Annotation

kegg
ID rcu:RCOM_0287620
description GTP-binding protein alpha subunit, gna, putative
nr
ID XP_012072921.1
description PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
swissprot
ID Q9C516
description Extra-large guanine nucleotide-binding protein 3 OS=Arabidopsis thaliana GN=XLG3 PE=1 SV=1
trembl
ID A0A067KMS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07954 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01838: 159739-171744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_120 0.0 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
2 Hb_000367_020 0.0842385016 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
3 Hb_015183_080 0.0871647586 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_000358_220 0.089022283 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
5 Hb_003895_040 0.0892433779 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
6 Hb_000003_410 0.0896623586 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
7 Hb_009476_120 0.0933958485 - - Clathrin heavy chain 1 [Glycine soja]
8 Hb_002005_030 0.0953647136 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_021596_010 0.0959651825 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
10 Hb_001226_110 0.0963143156 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
11 Hb_005649_080 0.0993735604 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
12 Hb_000445_130 0.099817449 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
13 Hb_000066_150 0.1000592296 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
14 Hb_001133_030 0.1016962481 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
15 Hb_122273_020 0.1018174415 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
16 Hb_008686_020 0.1031448394 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
17 Hb_000172_340 0.1031873594 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
18 Hb_011457_140 0.103192522 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
19 Hb_001124_050 0.1034350535 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
20 Hb_000059_230 0.1048249397 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]

Gene co-expression network

sample Hb_001054_120 Hb_001054_120 Hb_000367_020 Hb_000367_020 Hb_001054_120--Hb_000367_020 Hb_015183_080 Hb_015183_080 Hb_001054_120--Hb_015183_080 Hb_000358_220 Hb_000358_220 Hb_001054_120--Hb_000358_220 Hb_003895_040 Hb_003895_040 Hb_001054_120--Hb_003895_040 Hb_000003_410 Hb_000003_410 Hb_001054_120--Hb_000003_410 Hb_009476_120 Hb_009476_120 Hb_001054_120--Hb_009476_120 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_001951_100 Hb_001951_100 Hb_000367_020--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_000367_020--Hb_008686_020 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_000154_130 Hb_000154_130 Hb_000367_020--Hb_000154_130 Hb_002521_020 Hb_002521_020 Hb_015183_080--Hb_002521_020 Hb_003014_030 Hb_003014_030 Hb_015183_080--Hb_003014_030 Hb_000445_130 Hb_000445_130 Hb_015183_080--Hb_000445_130 Hb_015183_080--Hb_000367_020 Hb_001124_050 Hb_001124_050 Hb_015183_080--Hb_001124_050 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_170077_010 Hb_170077_010 Hb_000358_220--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_014497_020 Hb_014497_020 Hb_003895_040--Hb_014497_020 Hb_000512_030 Hb_000512_030 Hb_003895_040--Hb_000512_030 Hb_007576_210 Hb_007576_210 Hb_003895_040--Hb_007576_210 Hb_003895_040--Hb_001124_050 Hb_007120_060 Hb_007120_060 Hb_003895_040--Hb_007120_060 Hb_000958_050 Hb_000958_050 Hb_000003_410--Hb_000958_050 Hb_001133_030 Hb_001133_030 Hb_000003_410--Hb_001133_030 Hb_000934_210 Hb_000934_210 Hb_000003_410--Hb_000934_210 Hb_003216_090 Hb_003216_090 Hb_000003_410--Hb_003216_090 Hb_000003_410--Hb_021596_010 Hb_000009_410 Hb_000009_410 Hb_000003_410--Hb_000009_410 Hb_001414_010 Hb_001414_010 Hb_009476_120--Hb_001414_010 Hb_008165_020 Hb_008165_020 Hb_009476_120--Hb_008165_020 Hb_001511_180 Hb_001511_180 Hb_009476_120--Hb_001511_180 Hb_160608_010 Hb_160608_010 Hb_009476_120--Hb_160608_010 Hb_003124_270 Hb_003124_270 Hb_009476_120--Hb_003124_270 Hb_021977_010 Hb_021977_010 Hb_009476_120--Hb_021977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96521 18.1042 9.09043 10.6835 7.04596 8.80367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41212 1.44622 5.4258 10.9651 17.8179

CAGE analysis