Hb_001054_130

Information

Type -
Description -
Location Contig1054: 174565-177567
Sequence    

Annotation

kegg
ID rcu:RCOM_1370030
description Protein SSU72, putative
nr
ID XP_002515629.1
description Protein SSU72, putative [Ricinus communis]
swissprot
ID Q6PC19
description RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1
trembl
ID B9RPG0
description Protein SSU72, putative OS=Ricinus communis GN=RCOM_1370030 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase ii subunit a c-terminal domain phosphatase ssu72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_130 0.0 - - Protein SSU72, putative [Ricinus communis]
2 Hb_004055_140 0.0931853395 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
3 Hb_022461_010 0.0979592866 - - -
4 Hb_000157_030 0.0991484684 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
5 Hb_003266_050 0.1002124744 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
6 Hb_000057_200 0.1013959216 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
7 Hb_009117_030 0.1053210917 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
8 Hb_009133_010 0.1070738241 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
9 Hb_033642_010 0.1087250053 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
10 Hb_010608_010 0.1096453914 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
11 Hb_002616_050 0.1099924248 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
12 Hb_010691_060 0.1100994175 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
13 Hb_000166_110 0.1132451336 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
14 Hb_000889_020 0.1138951639 - - ribosome biogenesis protein brix, putative [Ricinus communis]
15 Hb_001789_240 0.1139103175 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
16 Hb_006692_030 0.1145115377 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
17 Hb_022250_130 0.1154889236 - - inositol hexaphosphate kinase, putative [Ricinus communis]
18 Hb_003777_270 0.1155060843 - - 60S ribosomal protein L3B [Hevea brasiliensis]
19 Hb_063090_010 0.1157571589 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
20 Hb_000015_210 0.11655781 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]

Gene co-expression network

sample Hb_001054_130 Hb_001054_130 Hb_004055_140 Hb_004055_140 Hb_001054_130--Hb_004055_140 Hb_022461_010 Hb_022461_010 Hb_001054_130--Hb_022461_010 Hb_000157_030 Hb_000157_030 Hb_001054_130--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_001054_130--Hb_003266_050 Hb_000057_200 Hb_000057_200 Hb_001054_130--Hb_000057_200 Hb_009117_030 Hb_009117_030 Hb_001054_130--Hb_009117_030 Hb_002616_050 Hb_002616_050 Hb_004055_140--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_004055_140--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_004055_140--Hb_033642_010 Hb_005117_010 Hb_005117_010 Hb_004055_140--Hb_005117_010 Hb_001454_140 Hb_001454_140 Hb_004055_140--Hb_001454_140 Hb_001266_080 Hb_001266_080 Hb_004055_140--Hb_001266_080 Hb_011828_020 Hb_011828_020 Hb_022461_010--Hb_011828_020 Hb_001477_130 Hb_001477_130 Hb_022461_010--Hb_001477_130 Hb_022461_010--Hb_003266_050 Hb_002374_160 Hb_002374_160 Hb_022461_010--Hb_002374_160 Hb_001048_020 Hb_001048_020 Hb_022461_010--Hb_001048_020 Hb_010691_060 Hb_010691_060 Hb_000157_030--Hb_010691_060 Hb_001766_150 Hb_001766_150 Hb_000157_030--Hb_001766_150 Hb_002107_160 Hb_002107_160 Hb_000157_030--Hb_002107_160 Hb_002391_300 Hb_002391_300 Hb_000157_030--Hb_002391_300 Hb_004440_050 Hb_004440_050 Hb_000157_030--Hb_004440_050 Hb_000157_030--Hb_003266_050 Hb_005389_150 Hb_005389_150 Hb_003266_050--Hb_005389_150 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_003266_050--Hb_010691_060 Hb_001278_110 Hb_001278_110 Hb_003266_050--Hb_001278_110 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003058_130 Hb_003058_130 Hb_003266_050--Hb_003058_130 Hb_004223_090 Hb_004223_090 Hb_000057_200--Hb_004223_090 Hb_185830_020 Hb_185830_020 Hb_000057_200--Hb_185830_020 Hb_039946_020 Hb_039946_020 Hb_000057_200--Hb_039946_020 Hb_000057_200--Hb_033642_010 Hb_005539_030 Hb_005539_030 Hb_000057_200--Hb_005539_030 Hb_002079_010 Hb_002079_010 Hb_000057_200--Hb_002079_010 Hb_005016_050 Hb_005016_050 Hb_009117_030--Hb_005016_050 Hb_009117_030--Hb_001266_080 Hb_000889_020 Hb_000889_020 Hb_009117_030--Hb_000889_020 Hb_003333_060 Hb_003333_060 Hb_009117_030--Hb_003333_060 Hb_032458_010 Hb_032458_010 Hb_009117_030--Hb_032458_010 Hb_000166_110 Hb_000166_110 Hb_009117_030--Hb_000166_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.85483 3.38296 4.87467 2.87494 7.96368 23.8158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6691 11.9639 8.22654 9.25742 3.83017

CAGE analysis