Hb_001056_040

Information

Type -
Description -
Location Contig1056: 49028-51310
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04450g
description POPTRDRAFT_762065; hypothetical protein
nr
ID XP_002308007.2
description hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID B9H9H7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04450g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01856: 50285-51445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001056_040 0.0 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
2 Hb_001140_300 0.0779803258 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
3 Hb_009252_080 0.078969366 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
4 Hb_174639_010 0.0802966552 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_002045_210 0.0834039993 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
6 Hb_001709_090 0.0834325428 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
7 Hb_001709_120 0.0845146335 - - hypothetical protein RCOM_1313640 [Ricinus communis]
8 Hb_001007_020 0.0860037842 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
9 Hb_025787_020 0.0881896182 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
10 Hb_007218_040 0.0883677767 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
11 Hb_002902_060 0.0926549115 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
12 Hb_001025_130 0.0933880272 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
13 Hb_003750_120 0.0970561525 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
14 Hb_001047_090 0.0989711158 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
15 Hb_000003_750 0.1021727395 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
16 Hb_000418_110 0.1035223673 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
17 Hb_000112_080 0.1035349223 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
18 Hb_010962_020 0.1039897339 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
19 Hb_003894_110 0.1100133332 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
20 Hb_050898_030 0.1107434265 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001056_040 Hb_001056_040 Hb_001140_300 Hb_001140_300 Hb_001056_040--Hb_001140_300 Hb_009252_080 Hb_009252_080 Hb_001056_040--Hb_009252_080 Hb_174639_010 Hb_174639_010 Hb_001056_040--Hb_174639_010 Hb_002045_210 Hb_002045_210 Hb_001056_040--Hb_002045_210 Hb_001709_090 Hb_001709_090 Hb_001056_040--Hb_001709_090 Hb_001709_120 Hb_001709_120 Hb_001056_040--Hb_001709_120 Hb_007218_040 Hb_007218_040 Hb_001140_300--Hb_007218_040 Hb_025787_020 Hb_025787_020 Hb_001140_300--Hb_025787_020 Hb_007632_070 Hb_007632_070 Hb_001140_300--Hb_007632_070 Hb_005181_170 Hb_005181_170 Hb_001140_300--Hb_005181_170 Hb_001396_030 Hb_001396_030 Hb_001140_300--Hb_001396_030 Hb_043552_010 Hb_043552_010 Hb_009252_080--Hb_043552_010 Hb_009252_080--Hb_001709_090 Hb_009252_080--Hb_025787_020 Hb_000162_190 Hb_000162_190 Hb_009252_080--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_009252_080--Hb_000345_230 Hb_001007_020 Hb_001007_020 Hb_174639_010--Hb_001007_020 Hb_001856_210 Hb_001856_210 Hb_174639_010--Hb_001856_210 Hb_174639_010--Hb_001709_120 Hb_001863_330 Hb_001863_330 Hb_174639_010--Hb_001863_330 Hb_000320_010 Hb_000320_010 Hb_174639_010--Hb_000320_010 Hb_005496_040 Hb_005496_040 Hb_002045_210--Hb_005496_040 Hb_000321_170 Hb_000321_170 Hb_002045_210--Hb_000321_170 Hb_000342_040 Hb_000342_040 Hb_002045_210--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_002045_210--Hb_003750_120 Hb_000022_080 Hb_000022_080 Hb_002045_210--Hb_000022_080 Hb_001709_090--Hb_043552_010 Hb_000375_260 Hb_000375_260 Hb_001709_090--Hb_000375_260 Hb_001709_090--Hb_000345_230 Hb_002028_270 Hb_002028_270 Hb_001709_090--Hb_002028_270 Hb_001025_130 Hb_001025_130 Hb_001709_120--Hb_001025_130 Hb_015292_020 Hb_015292_020 Hb_001709_120--Hb_015292_020 Hb_002902_060 Hb_002902_060 Hb_001709_120--Hb_002902_060 Hb_006483_070 Hb_006483_070 Hb_001709_120--Hb_006483_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0161398 0.134056 1.53297 2.39847 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.150644 0.602124

CAGE analysis