Hb_001057_010

Information

Type -
Description -
Location Contig1057: 40047-70446
Sequence    

Annotation

kegg
ID rcu:RCOM_1707830
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_002518263.1
description cation-transporting atpase plant, putative [Ricinus communis]
swissprot
ID Q9LF79
description Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=ACA8 PE=1 SV=1
trembl
ID B9RWZ4
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_1707830 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01882: 44228-70497 , PASA_asmbl_01883: 40173-44908 , PASA_asmbl_01884: 66339-66921 , PASA_asmbl_01888: 52484-52814 , PASA_asmbl_01889: 40173-44852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001057_010 0.0 - - cation-transporting atpase plant, putative [Ricinus communis]
2 Hb_012654_010 0.0640838098 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
3 Hb_000340_510 0.0756376554 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
4 Hb_005237_010 0.0853661172 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
5 Hb_017168_010 0.0903785227 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003097_190 0.0911926047 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
7 Hb_002942_220 0.0919835065 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
8 Hb_000107_100 0.0933786469 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
9 Hb_000139_250 0.0946669669 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
10 Hb_002890_030 0.0949324946 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_010222_080 0.095301759 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
12 Hb_000001_180 0.0953590772 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
13 Hb_006400_040 0.0961954687 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
14 Hb_000270_780 0.097105526 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
15 Hb_000236_100 0.0978531848 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
16 Hb_001817_180 0.098373364 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
17 Hb_005214_160 0.0993742267 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
18 Hb_000078_130 0.1003155729 - - -
19 Hb_029866_130 0.1009221909 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
20 Hb_156850_030 0.1014925581 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]

Gene co-expression network

sample Hb_001057_010 Hb_001057_010 Hb_012654_010 Hb_012654_010 Hb_001057_010--Hb_012654_010 Hb_000340_510 Hb_000340_510 Hb_001057_010--Hb_000340_510 Hb_005237_010 Hb_005237_010 Hb_001057_010--Hb_005237_010 Hb_017168_010 Hb_017168_010 Hb_001057_010--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_001057_010--Hb_003097_190 Hb_002942_220 Hb_002942_220 Hb_001057_010--Hb_002942_220 Hb_001504_160 Hb_001504_160 Hb_012654_010--Hb_001504_160 Hb_000107_100 Hb_000107_100 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_002818_040 Hb_002818_040 Hb_000340_510--Hb_002818_040 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000340_510--Hb_000107_100 Hb_002026_110 Hb_002026_110 Hb_000340_510--Hb_002026_110 Hb_000340_510--Hb_017168_010 Hb_003097_150 Hb_003097_150 Hb_005237_010--Hb_003097_150 Hb_004600_040 Hb_004600_040 Hb_005237_010--Hb_004600_040 Hb_005928_060 Hb_005928_060 Hb_005237_010--Hb_005928_060 Hb_005237_010--Hb_012654_010 Hb_000815_210 Hb_000815_210 Hb_005237_010--Hb_000815_210 Hb_002007_250 Hb_002007_250 Hb_005237_010--Hb_002007_250 Hb_017168_010--Hb_000107_100 Hb_010222_080 Hb_010222_080 Hb_017168_010--Hb_010222_080 Hb_017168_010--Hb_002026_110 Hb_017168_010--Hb_002942_220 Hb_012132_030 Hb_012132_030 Hb_017168_010--Hb_012132_030 Hb_010068_030 Hb_010068_030 Hb_003097_190--Hb_010068_030 Hb_003097_190--Hb_012654_010 Hb_000152_560 Hb_000152_560 Hb_003097_190--Hb_000152_560 Hb_002890_030 Hb_002890_030 Hb_003097_190--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_003097_190--Hb_000861_070 Hb_002942_220--Hb_000139_250 Hb_002942_220--Hb_010222_080 Hb_002400_180 Hb_002400_180 Hb_002942_220--Hb_002400_180 Hb_004678_020 Hb_004678_020 Hb_002942_220--Hb_004678_020 Hb_144787_030 Hb_144787_030 Hb_002942_220--Hb_144787_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.16 37.5151 7.85936 15.802 91.3623 57.255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.6023 36.2779 47.1338 19.6654 11.0014

CAGE analysis