Hb_001057_040

Information

Type -
Description -
Location Contig1057: 122016-122534
Sequence    

Annotation

kegg
ID tcc:TCM_039631
description Oligosaccharyltransferase complex/magnesium transporter family protein
nr
ID XP_012075188.1
description PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
swissprot
ID Q9VQP9
description Putative oligosaccharyltransferase complex subunit CG9662 OS=Drosophila melanogaster GN=CG9662 PE=2 SV=3
trembl
ID A0A067KTT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09368 PE=4 SV=1
Gene Ontology
ID GO:0005886
description oligosaccharyltransferase complex subunit ostc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 042_B03.ab1: 121908-122568

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001057_040 0.0 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
2 Hb_000701_100 0.0719820921 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
3 Hb_009051_030 0.0735065343 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
4 Hb_009615_070 0.0798977994 - - type X protein phosphatase-II [Populus trichocarpa]
5 Hb_018124_010 0.0810519287 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
6 Hb_008695_050 0.0813677181 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000406_080 0.082050197 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
8 Hb_006573_020 0.0830383361 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
9 Hb_003787_010 0.0850601453 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
10 Hb_000102_020 0.0853822968 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
11 Hb_001814_050 0.0854580914 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000656_170 0.0854949867 - - lsm1, putative [Ricinus communis]
13 Hb_004767_080 0.086973962 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
14 Hb_000005_090 0.0876356379 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
15 Hb_000363_360 0.0876914175 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
16 Hb_000982_090 0.0877256605 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
17 Hb_007441_040 0.0879955685 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
18 Hb_002105_100 0.0886944581 - - protein with unknown function [Ricinus communis]
19 Hb_003108_020 0.0894315568 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
20 Hb_089032_030 0.0897485103 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001057_040 Hb_001057_040 Hb_000701_100 Hb_000701_100 Hb_001057_040--Hb_000701_100 Hb_009051_030 Hb_009051_030 Hb_001057_040--Hb_009051_030 Hb_009615_070 Hb_009615_070 Hb_001057_040--Hb_009615_070 Hb_018124_010 Hb_018124_010 Hb_001057_040--Hb_018124_010 Hb_008695_050 Hb_008695_050 Hb_001057_040--Hb_008695_050 Hb_000406_080 Hb_000406_080 Hb_001057_040--Hb_000406_080 Hb_004899_370 Hb_004899_370 Hb_000701_100--Hb_004899_370 Hb_000805_240 Hb_000805_240 Hb_000701_100--Hb_000805_240 Hb_005269_080 Hb_005269_080 Hb_000701_100--Hb_005269_080 Hb_000005_090 Hb_000005_090 Hb_000701_100--Hb_000005_090 Hb_003414_050 Hb_003414_050 Hb_000701_100--Hb_003414_050 Hb_000102_020 Hb_000102_020 Hb_009051_030--Hb_000102_020 Hb_003787_010 Hb_003787_010 Hb_009051_030--Hb_003787_010 Hb_005784_110 Hb_005784_110 Hb_009051_030--Hb_005784_110 Hb_000656_170 Hb_000656_170 Hb_009051_030--Hb_000656_170 Hb_000574_480 Hb_000574_480 Hb_009051_030--Hb_000574_480 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_009615_070--Hb_004889_010 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_004767_080 Hb_004767_080 Hb_018124_010--Hb_004767_080 Hb_143766_010 Hb_143766_010 Hb_018124_010--Hb_143766_010 Hb_018124_010--Hb_003787_010 Hb_004052_050 Hb_004052_050 Hb_018124_010--Hb_004052_050 Hb_000417_360 Hb_000417_360 Hb_018124_010--Hb_000417_360 Hb_018124_010--Hb_000701_100 Hb_001653_020 Hb_001653_020 Hb_008695_050--Hb_001653_020 Hb_005307_050 Hb_005307_050 Hb_008695_050--Hb_005307_050 Hb_000207_400 Hb_000207_400 Hb_008695_050--Hb_000207_400 Hb_000414_130 Hb_000414_130 Hb_008695_050--Hb_000414_130 Hb_007928_030 Hb_007928_030 Hb_008695_050--Hb_007928_030 Hb_000417_040 Hb_000417_040 Hb_000406_080--Hb_000417_040 Hb_000329_110 Hb_000329_110 Hb_000406_080--Hb_000329_110 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_000645_090 Hb_000645_090 Hb_000406_080--Hb_000645_090 Hb_181385_010 Hb_181385_010 Hb_000406_080--Hb_181385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2098 13.1891 12.4114 30.5004 10.2457 24.0002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9602 48.1362 25.0697 20.8494 10.6613

CAGE analysis