Hb_001057_050

Information

Type -
Description -
Location Contig1057: 127767-130290
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15960g
description POPTRDRAFT_800083; hypothetical protein
nr
ID XP_002304634.2
description hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
swissprot
ID Q9M2F1
description 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2
trembl
ID B9GZ08
description 40S ribosomal protein S27 (Fragment) OS=Populus trichocarpa GN=POPTR_0003s15960g PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s27-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01892: 128788-130079
cDNA
(Sanger)
(ID:Location)		 013_I20.ab1: 128791-130079 , 033_F15.ab1: 128838-130079 , 035_J01.ab1: 128800-130077 , 036_O16.ab1: 128982-130077 , 040_D11.ab1: 128838-130079 , 042_D13.ab1: 128800-130077

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001057_050 0.0 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
2 Hb_004807_060 0.0933164756 - - -
3 Hb_000193_350 0.1029046089 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
4 Hb_102156_010 0.1122727648 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000175_400 0.1134610026 - - conserved hypothetical protein [Ricinus communis]
6 Hb_017711_010 0.1297972401 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
7 Hb_002259_150 0.1336053911 - - BnaC04g40780D [Brassica napus]
8 Hb_014834_140 0.1352162517 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
9 Hb_005224_050 0.1364194619 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
10 Hb_003058_220 0.1371808795 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
11 Hb_004117_180 0.1412316753 - - -
12 Hb_029888_020 0.1444425576 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
13 Hb_011016_090 0.1451488564 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
14 Hb_001610_130 0.1457012333 - - 40S ribosomal protein S30 [Medicago truncatula]
15 Hb_000003_350 0.1520943452 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
16 Hb_001310_070 0.1539547377 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
17 Hb_003746_060 0.1545812757 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
18 Hb_120221_010 0.1568716743 - - -
19 Hb_000122_030 0.1586584583 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
20 Hb_000032_540 0.1596120985 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001057_050 Hb_001057_050 Hb_004807_060 Hb_004807_060 Hb_001057_050--Hb_004807_060 Hb_000193_350 Hb_000193_350 Hb_001057_050--Hb_000193_350 Hb_102156_010 Hb_102156_010 Hb_001057_050--Hb_102156_010 Hb_000175_400 Hb_000175_400 Hb_001057_050--Hb_000175_400 Hb_017711_010 Hb_017711_010 Hb_001057_050--Hb_017711_010 Hb_002259_150 Hb_002259_150 Hb_001057_050--Hb_002259_150 Hb_004807_060--Hb_000193_350 Hb_003058_220 Hb_003058_220 Hb_004807_060--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_004807_060--Hb_005224_050 Hb_014834_140 Hb_014834_140 Hb_004807_060--Hb_014834_140 Hb_000094_020 Hb_000094_020 Hb_004807_060--Hb_000094_020 Hb_000193_350--Hb_000175_400 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_000193_350--Hb_017711_010 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090 Hb_102156_010--Hb_002259_150 Hb_102156_010--Hb_000175_400 Hb_102156_010--Hb_000193_350 Hb_000032_540 Hb_000032_540 Hb_102156_010--Hb_000032_540 Hb_002272_260 Hb_002272_260 Hb_102156_010--Hb_002272_260 Hb_004453_150 Hb_004453_150 Hb_102156_010--Hb_004453_150 Hb_002259_030 Hb_002259_030 Hb_000175_400--Hb_002259_030 Hb_000175_400--Hb_004453_150 Hb_025193_050 Hb_025193_050 Hb_000175_400--Hb_025193_050 Hb_000175_400--Hb_011016_090 Hb_000089_130 Hb_000089_130 Hb_000175_400--Hb_000089_130 Hb_017711_010--Hb_005224_050 Hb_002293_030 Hb_002293_030 Hb_017711_010--Hb_002293_030 Hb_017711_010--Hb_000175_400 Hb_017711_010--Hb_003058_220 Hb_000009_040 Hb_000009_040 Hb_017711_010--Hb_000009_040 Hb_007317_060 Hb_007317_060 Hb_002259_150--Hb_007317_060 Hb_002259_150--Hb_002272_260 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_002259_150--Hb_004453_150 Hb_002259_150--Hb_000193_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
223.535 125.628 26.9093 205.501 207.073 1081.36
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
802.356 957.224 225.371 104.645 13.5339

CAGE analysis