Hb_001059_030

Information

Type -
Description -
Location Contig1059: 50155-64087
Sequence    

Annotation

kegg
ID sly:101245052
description F-box protein At5g03100-like
nr
ID XP_004237577.1
description PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
swissprot
ID Q1PE04
description F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana GN=FBL25 PE=2 SV=1
trembl
ID K4BSY8
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g057950.1 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at1g49610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01931: 53823-54277 , PASA_asmbl_01932: 54300-64023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_030 0.0 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
2 Hb_004635_100 0.0635310898 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
3 Hb_010422_060 0.0672008684 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
4 Hb_012053_070 0.0718493861 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
5 Hb_000062_220 0.0733047565 - - BnaC02g35870D [Brassica napus]
6 Hb_000240_090 0.07743181 - - Rab5 [Hevea brasiliensis]
7 Hb_000059_370 0.0813865502 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
8 Hb_000020_060 0.0827162678 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
9 Hb_000368_010 0.0835017943 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
10 Hb_000120_680 0.0835687488 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
11 Hb_004994_100 0.0838165936 - - acyl-CoA thioesterase, putative [Ricinus communis]
12 Hb_000058_060 0.0838178581 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
13 Hb_000086_280 0.0841959021 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
14 Hb_159809_020 0.0847059187 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002995_020 0.0853046939 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
16 Hb_000638_250 0.0853198589 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000580_090 0.0859164743 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
18 Hb_001902_140 0.0864204871 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
19 Hb_158467_010 0.0867669492 - - transporter, putative [Ricinus communis]
20 Hb_004724_340 0.0873762803 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]

Gene co-expression network

sample Hb_001059_030 Hb_001059_030 Hb_004635_100 Hb_004635_100 Hb_001059_030--Hb_004635_100 Hb_010422_060 Hb_010422_060 Hb_001059_030--Hb_010422_060 Hb_012053_070 Hb_012053_070 Hb_001059_030--Hb_012053_070 Hb_000062_220 Hb_000062_220 Hb_001059_030--Hb_000062_220 Hb_000240_090 Hb_000240_090 Hb_001059_030--Hb_000240_090 Hb_000059_370 Hb_000059_370 Hb_001059_030--Hb_000059_370 Hb_004635_100--Hb_000240_090 Hb_000915_090 Hb_000915_090 Hb_004635_100--Hb_000915_090 Hb_029879_130 Hb_029879_130 Hb_004635_100--Hb_029879_130 Hb_000676_180 Hb_000676_180 Hb_004635_100--Hb_000676_180 Hb_000120_680 Hb_000120_680 Hb_004635_100--Hb_000120_680 Hb_002830_030 Hb_002830_030 Hb_010422_060--Hb_002830_030 Hb_000504_140 Hb_000504_140 Hb_010422_060--Hb_000504_140 Hb_010422_060--Hb_000062_220 Hb_005779_060 Hb_005779_060 Hb_010422_060--Hb_005779_060 Hb_004254_120 Hb_004254_120 Hb_010422_060--Hb_004254_120 Hb_000331_450 Hb_000331_450 Hb_012053_070--Hb_000331_450 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_001105_070 Hb_001105_070 Hb_012053_070--Hb_001105_070 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_000062_220--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_000062_220--Hb_000876_070 Hb_007416_320 Hb_007416_320 Hb_000062_220--Hb_007416_320 Hb_012019_010 Hb_012019_010 Hb_000062_220--Hb_012019_010 Hb_008725_260 Hb_008725_260 Hb_000062_220--Hb_008725_260 Hb_000240_090--Hb_000120_680 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42481 2.43659 2.36133 2.85825 4.06681 3.08408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.29895 6.92628 6.2256 3.04066 2.12575

CAGE analysis