Hb_001059_050

Information

Type -
Description -
Location Contig1059: 67177-68943
Sequence    

Annotation

kegg
ID vvi:100244825
description putative F-box protein At1g49610
nr
ID XP_012092401.1
description PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
swissprot
ID Q9LV26
description Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=3 SV=2
trembl
ID A0A067JDP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21359 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box lrr-repeat protein at3g03360-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_050 0.0 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
2 Hb_000286_210 0.0532654454 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
3 Hb_151616_010 0.0544242478 - - -
4 Hb_021443_020 0.0811559431 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
5 Hb_132517_010 0.0874756834 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
6 Hb_001213_080 0.0909120226 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
7 Hb_007313_050 0.0978785256 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
8 Hb_005396_110 0.0979978696 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002639_120 0.1101283733 - - unnamed protein product [Vitis vinifera]
10 Hb_035006_010 0.1178649852 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
11 Hb_005389_090 0.1182737825 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
12 Hb_001227_010 0.1210194869 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
13 Hb_003012_010 0.1331545035 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005900_020 0.1342366091 - - -
15 Hb_002422_010 0.1359477064 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
16 Hb_000509_040 0.1390626909 - - hypothetical protein VITISV_009716 [Vitis vinifera]
17 Hb_001610_050 0.1416781807 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
18 Hb_001897_030 0.1462128149 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
19 Hb_006890_050 0.1468023462 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
20 Hb_160459_030 0.1490410087 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]

Gene co-expression network

sample Hb_001059_050 Hb_001059_050 Hb_000286_210 Hb_000286_210 Hb_001059_050--Hb_000286_210 Hb_151616_010 Hb_151616_010 Hb_001059_050--Hb_151616_010 Hb_021443_020 Hb_021443_020 Hb_001059_050--Hb_021443_020 Hb_132517_010 Hb_132517_010 Hb_001059_050--Hb_132517_010 Hb_001213_080 Hb_001213_080 Hb_001059_050--Hb_001213_080 Hb_007313_050 Hb_007313_050 Hb_001059_050--Hb_007313_050 Hb_000286_210--Hb_151616_010 Hb_000286_210--Hb_021443_020 Hb_003012_010 Hb_003012_010 Hb_000286_210--Hb_003012_010 Hb_000286_210--Hb_001213_080 Hb_002639_120 Hb_002639_120 Hb_000286_210--Hb_002639_120 Hb_151616_010--Hb_002639_120 Hb_002422_010 Hb_002422_010 Hb_151616_010--Hb_002422_010 Hb_151616_010--Hb_132517_010 Hb_151616_010--Hb_003012_010 Hb_021443_020--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_021443_020--Hb_035006_010 Hb_001610_050 Hb_001610_050 Hb_021443_020--Hb_001610_050 Hb_001227_010 Hb_001227_010 Hb_021443_020--Hb_001227_010 Hb_005389_090 Hb_005389_090 Hb_132517_010--Hb_005389_090 Hb_005396_110 Hb_005396_110 Hb_132517_010--Hb_005396_110 Hb_001897_030 Hb_001897_030 Hb_132517_010--Hb_001897_030 Hb_132517_010--Hb_001227_010 Hb_001213_080--Hb_007313_050 Hb_148914_020 Hb_148914_020 Hb_001213_080--Hb_148914_020 Hb_048937_010 Hb_048937_010 Hb_001213_080--Hb_048937_010 Hb_000128_090 Hb_000128_090 Hb_001213_080--Hb_000128_090 Hb_003939_090 Hb_003939_090 Hb_007313_050--Hb_003939_090 Hb_007313_050--Hb_035006_010 Hb_007313_050--Hb_000286_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.926671 0.121299 0.941292 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.151955 0

CAGE analysis