Hb_001059_080

Information

Type -
Description -
Location Contig1059: 85009-85722
Sequence    

Annotation

kegg
ID mus:103989391
description F-box protein At1g61340-like
nr
ID XP_009406493.1
description PREDICTED: F-box protein At1g61340-like [Musa acuminata subsp. malaccensis]
swissprot
ID Q5XF11
description F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1
trembl
ID C5XBJ9
description Putative uncharacterized protein Sb02g036360 OS=Sorghum bicolor GN=Sb02g036360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_080 0.0 - - PREDICTED: F-box protein At1g61340-like [Musa acuminata subsp. malaccensis]
2 Hb_000538_010 0.1683494092 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
3 Hb_000152_510 0.1981998453 - - kinase, putative [Ricinus communis]
4 Hb_001307_010 0.2118955985 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
5 Hb_000390_220 0.2239721673 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
6 Hb_013394_060 0.226040768 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
7 Hb_000122_250 0.228943023 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
8 Hb_003517_060 0.2321014007 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
9 Hb_006745_010 0.2387948576 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
10 Hb_000904_130 0.2388723677 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
11 Hb_000834_240 0.2413526595 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
12 Hb_004449_050 0.2428543591 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
13 Hb_006501_060 0.2431956945 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
14 Hb_004712_170 0.2449648063 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
15 Hb_009372_010 0.2453283618 - - -
16 Hb_030827_060 0.2454405165 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
17 Hb_000152_640 0.2485107558 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
18 Hb_082945_020 0.2499626807 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_002316_050 0.250121854 - - conserved hypothetical protein [Ricinus communis]
20 Hb_031711_010 0.2505963168 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001059_080 Hb_001059_080 Hb_000538_010 Hb_000538_010 Hb_001059_080--Hb_000538_010 Hb_000152_510 Hb_000152_510 Hb_001059_080--Hb_000152_510 Hb_001307_010 Hb_001307_010 Hb_001059_080--Hb_001307_010 Hb_000390_220 Hb_000390_220 Hb_001059_080--Hb_000390_220 Hb_013394_060 Hb_013394_060 Hb_001059_080--Hb_013394_060 Hb_000122_250 Hb_000122_250 Hb_001059_080--Hb_000122_250 Hb_000538_010--Hb_001307_010 Hb_031711_010 Hb_031711_010 Hb_000538_010--Hb_031711_010 Hb_000538_010--Hb_000390_220 Hb_000538_010--Hb_013394_060 Hb_000920_250 Hb_000920_250 Hb_000538_010--Hb_000920_250 Hb_001189_130 Hb_001189_130 Hb_000538_010--Hb_001189_130 Hb_000152_510--Hb_000538_010 Hb_000904_130 Hb_000904_130 Hb_000152_510--Hb_000904_130 Hb_004724_220 Hb_004724_220 Hb_000152_510--Hb_004724_220 Hb_007403_110 Hb_007403_110 Hb_000152_510--Hb_007403_110 Hb_000152_510--Hb_031711_010 Hb_167381_020 Hb_167381_020 Hb_001307_010--Hb_167381_020 Hb_000422_110 Hb_000422_110 Hb_001307_010--Hb_000422_110 Hb_001307_010--Hb_031711_010 Hb_009771_100 Hb_009771_100 Hb_001307_010--Hb_009771_100 Hb_011909_060 Hb_011909_060 Hb_001307_010--Hb_011909_060 Hb_001454_220 Hb_001454_220 Hb_001307_010--Hb_001454_220 Hb_001662_030 Hb_001662_030 Hb_000390_220--Hb_001662_030 Hb_075449_020 Hb_075449_020 Hb_000390_220--Hb_075449_020 Hb_000390_220--Hb_001189_130 Hb_025306_010 Hb_025306_010 Hb_000390_220--Hb_025306_010 Hb_000390_220--Hb_001307_010 Hb_000953_030 Hb_000953_030 Hb_000390_220--Hb_000953_030 Hb_002999_060 Hb_002999_060 Hb_013394_060--Hb_002999_060 Hb_000483_380 Hb_000483_380 Hb_013394_060--Hb_000483_380 Hb_002965_030 Hb_002965_030 Hb_013394_060--Hb_002965_030 Hb_000720_070 Hb_000720_070 Hb_013394_060--Hb_000720_070 Hb_030827_060 Hb_030827_060 Hb_013394_060--Hb_030827_060 Hb_000122_250--Hb_013394_060 Hb_002344_090 Hb_002344_090 Hb_000122_250--Hb_002344_090 Hb_000122_250--Hb_002999_060 Hb_000122_250--Hb_000720_070 Hb_003517_060 Hb_003517_060 Hb_000122_250--Hb_003517_060 Hb_000122_250--Hb_000538_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91999 15.5645 5.40359 3.3905 12.9081 6.54538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86032 2.14374 2.83336 0.322685 0

CAGE analysis