Hb_001059_100

Information

Type -
Description -
Location Contig1059: 94431-98234
Sequence    

Annotation

kegg
ID vvi:100854624
description heterogeneous nuclear ribonucleoprotein U-like protein 1
nr
ID XP_012091490.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
swissprot
ID Q9BUJ2
description Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens GN=HNRNPUL1 PE=1 SV=2
trembl
ID A0A067JDP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21354 PE=4 SV=1
Gene Ontology
ID GO:0005515
description heterogeneous nuclear ribonucleoprotein u-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01940: 94494-98052 , PASA_asmbl_01942: 96439-97995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_100 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
2 Hb_000025_360 0.0776984996 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
3 Hb_000865_080 0.0786193584 - - arsenite-resistance protein, putative [Ricinus communis]
4 Hb_007676_100 0.0803974883 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
5 Hb_000140_070 0.0804926174 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
6 Hb_000959_040 0.0813622538 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
7 Hb_000291_190 0.0857317072 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
8 Hb_005946_170 0.0872930614 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
9 Hb_001902_060 0.0894903062 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
10 Hb_001616_050 0.0930712449 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
11 Hb_003935_030 0.0932822907 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
12 Hb_124677_060 0.0933221385 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_006847_040 0.093870558 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
14 Hb_002188_110 0.0942711922 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_000363_130 0.0943008618 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
16 Hb_002813_010 0.0953406015 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
17 Hb_004032_180 0.0954097763 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
18 Hb_007403_050 0.0961519725 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
19 Hb_000441_070 0.0961840174 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
20 Hb_002477_150 0.096239129 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001059_100 Hb_001059_100 Hb_000025_360 Hb_000025_360 Hb_001059_100--Hb_000025_360 Hb_000865_080 Hb_000865_080 Hb_001059_100--Hb_000865_080 Hb_007676_100 Hb_007676_100 Hb_001059_100--Hb_007676_100 Hb_000140_070 Hb_000140_070 Hb_001059_100--Hb_000140_070 Hb_000959_040 Hb_000959_040 Hb_001059_100--Hb_000959_040 Hb_000291_190 Hb_000291_190 Hb_001059_100--Hb_000291_190 Hb_045793_010 Hb_045793_010 Hb_000025_360--Hb_045793_010 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_000865_080--Hb_000291_190 Hb_000224_060 Hb_000224_060 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000865_080--Hb_000025_360 Hb_004659_080 Hb_004659_080 Hb_007676_100--Hb_004659_080 Hb_007676_100--Hb_000959_040 Hb_006252_020 Hb_006252_020 Hb_007676_100--Hb_006252_020 Hb_000331_330 Hb_000331_330 Hb_007676_100--Hb_000331_330 Hb_007676_100--Hb_002188_110 Hb_004128_050 Hb_004128_050 Hb_007676_100--Hb_004128_050 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_076693_020 Hb_076693_020 Hb_000140_070--Hb_076693_020 Hb_001220_030 Hb_001220_030 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_000959_040--Hb_002188_110 Hb_004718_010 Hb_004718_010 Hb_000959_040--Hb_004718_010 Hb_000959_040--Hb_183963_030 Hb_010578_060 Hb_010578_060 Hb_000959_040--Hb_010578_060 Hb_018133_050 Hb_018133_050 Hb_000959_040--Hb_018133_050 Hb_000291_190--Hb_000224_060 Hb_000291_190--Hb_000025_360 Hb_006586_050 Hb_006586_050 Hb_000291_190--Hb_006586_050 Hb_003878_140 Hb_003878_140 Hb_000291_190--Hb_003878_140 Hb_001616_050 Hb_001616_050 Hb_000291_190--Hb_001616_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1363 27.8918 7.116 6.21996 20.5335 24.8697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7735 7.55795 11.1851 8.87331 5.87933

CAGE analysis