Hb_001059_110

Information

Type -
Description -
Location Contig1059: 102481-103212
Sequence    

Annotation

kegg
ID rcu:RCOM_1095870
description hypothetical protein
nr
ID XP_012091489.1
description PREDICTED: uncharacterized protein LOC105649457 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21353 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 025_L22.ab1: 102360-103139

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_110 0.0 - - PREDICTED: uncharacterized protein LOC105649457 [Jatropha curcas]
2 Hb_000742_290 0.0962442982 - - Reticuline oxidase precursor, putative [Ricinus communis]
3 Hb_048476_130 0.1235866524 - - scab resistance family protein [Populus trichocarpa]
4 Hb_004531_130 0.1379680333 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
5 Hb_000085_410 0.1426421487 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
6 Hb_002026_050 0.1442331844 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
7 Hb_003992_020 0.1511788893 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
8 Hb_000260_110 0.1528593497 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
9 Hb_000749_290 0.1563076568 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
10 Hb_005542_070 0.1574273701 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
11 Hb_000922_050 0.1580445175 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
12 Hb_077694_020 0.1596190452 - - SAUR family protein [Theobroma cacao]
13 Hb_002233_160 0.1632267542 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
14 Hb_050898_030 0.1637865843 - - conserved hypothetical protein [Ricinus communis]
15 Hb_020738_010 0.1650553375 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
16 Hb_005111_020 0.1656704488 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
17 Hb_039946_060 0.1668143536 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
18 Hb_010690_010 0.1682082634 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
19 Hb_143629_120 0.1687553752 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_188281_010 0.1693707091 - - carboxylic ester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001059_110 Hb_001059_110 Hb_000742_290 Hb_000742_290 Hb_001059_110--Hb_000742_290 Hb_048476_130 Hb_048476_130 Hb_001059_110--Hb_048476_130 Hb_004531_130 Hb_004531_130 Hb_001059_110--Hb_004531_130 Hb_000085_410 Hb_000085_410 Hb_001059_110--Hb_000085_410 Hb_002026_050 Hb_002026_050 Hb_001059_110--Hb_002026_050 Hb_003992_020 Hb_003992_020 Hb_001059_110--Hb_003992_020 Hb_000742_290--Hb_004531_130 Hb_000742_290--Hb_000085_410 Hb_010690_010 Hb_010690_010 Hb_000742_290--Hb_010690_010 Hb_001882_080 Hb_001882_080 Hb_000742_290--Hb_001882_080 Hb_000922_050 Hb_000922_050 Hb_000742_290--Hb_000922_050 Hb_048476_130--Hb_003992_020 Hb_005542_070 Hb_005542_070 Hb_048476_130--Hb_005542_070 Hb_012691_020 Hb_012691_020 Hb_048476_130--Hb_012691_020 Hb_002781_040 Hb_002781_040 Hb_048476_130--Hb_002781_040 Hb_003893_180 Hb_003893_180 Hb_048476_130--Hb_003893_180 Hb_004531_130--Hb_010690_010 Hb_050898_030 Hb_050898_030 Hb_004531_130--Hb_050898_030 Hb_009070_010 Hb_009070_010 Hb_004531_130--Hb_009070_010 Hb_000861_060 Hb_000861_060 Hb_004531_130--Hb_000861_060 Hb_020738_010 Hb_020738_010 Hb_004531_130--Hb_020738_010 Hb_000085_410--Hb_000922_050 Hb_001110_060 Hb_001110_060 Hb_000085_410--Hb_001110_060 Hb_001408_080 Hb_001408_080 Hb_000085_410--Hb_001408_080 Hb_003427_070 Hb_003427_070 Hb_000085_410--Hb_003427_070 Hb_000085_410--Hb_004531_130 Hb_004109_210 Hb_004109_210 Hb_002026_050--Hb_004109_210 Hb_000365_280 Hb_000365_280 Hb_002026_050--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_002026_050--Hb_002893_030 Hb_005408_080 Hb_005408_080 Hb_002026_050--Hb_005408_080 Hb_007163_050 Hb_007163_050 Hb_002026_050--Hb_007163_050 Hb_000329_720 Hb_000329_720 Hb_003992_020--Hb_000329_720 Hb_043552_010 Hb_043552_010 Hb_003992_020--Hb_043552_010 Hb_000375_260 Hb_000375_260 Hb_003992_020--Hb_000375_260 Hb_003935_040 Hb_003935_040 Hb_003992_020--Hb_003935_040 Hb_000005_360 Hb_000005_360 Hb_003992_020--Hb_000005_360 Hb_009252_080 Hb_009252_080 Hb_003992_020--Hb_009252_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.280984 8.75674 18.6652 36.9712 0.0950369 0.0292227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304261 2.39209 0.321698 1.28717 7.13445

CAGE analysis