Hb_001059_120

Information

Type -
Description -
Location Contig1059: 111105-116964
Sequence    

Annotation

kegg
ID rcu:RCOM_1095880
description NADH dehydrogenase, putative (EC:1.6.5.3)
nr
ID XP_002524685.1
description NADH dehydrogenase, putative [Ricinus communis]
swissprot
ID Q94BV7
description External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1
trembl
ID B9SFB6
description NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_1095880 PE=4 SV=1
Gene Ontology
ID GO:0005509
description external alternative nad h-ubiquinone oxidoreductase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01945: 114707-115776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_120 0.0 - - NADH dehydrogenase, putative [Ricinus communis]
2 Hb_002042_080 0.1196205503 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
3 Hb_001433_110 0.1654142368 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
4 Hb_147752_010 0.1716764699 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
5 Hb_004679_060 0.1744138015 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007313_080 0.176527841 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
7 Hb_000270_740 0.177681902 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
8 Hb_015430_010 0.1870207024 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
9 Hb_003020_150 0.1885327981 - - tropinone reductase, putative [Ricinus communis]
10 Hb_009075_010 0.1898250736 - - 60S ribosomal protein L10B [Hevea brasiliensis]
11 Hb_005054_260 0.1909943122 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
12 Hb_000163_050 0.1915049599 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
13 Hb_007441_260 0.1935583232 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
14 Hb_000208_180 0.197582435 - - PREDICTED: histone H2B-like [Populus euphratica]
15 Hb_000252_110 0.2013331237 - - -
16 Hb_002374_380 0.2042571487 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
17 Hb_000031_080 0.2043786392 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
18 Hb_000739_140 0.2044548874 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
19 Hb_002900_130 0.2048758942 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
20 Hb_000260_620 0.2049839172 - - Thermosensitive gluconokinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001059_120 Hb_001059_120 Hb_002042_080 Hb_002042_080 Hb_001059_120--Hb_002042_080 Hb_001433_110 Hb_001433_110 Hb_001059_120--Hb_001433_110 Hb_147752_010 Hb_147752_010 Hb_001059_120--Hb_147752_010 Hb_004679_060 Hb_004679_060 Hb_001059_120--Hb_004679_060 Hb_007313_080 Hb_007313_080 Hb_001059_120--Hb_007313_080 Hb_000270_740 Hb_000270_740 Hb_001059_120--Hb_000270_740 Hb_000178_120 Hb_000178_120 Hb_002042_080--Hb_000178_120 Hb_002042_080--Hb_147752_010 Hb_002243_060 Hb_002243_060 Hb_002042_080--Hb_002243_060 Hb_007441_260 Hb_007441_260 Hb_002042_080--Hb_007441_260 Hb_001240_020 Hb_001240_020 Hb_002042_080--Hb_001240_020 Hb_004453_080 Hb_004453_080 Hb_001433_110--Hb_004453_080 Hb_002374_380 Hb_002374_380 Hb_001433_110--Hb_002374_380 Hb_001221_570 Hb_001221_570 Hb_001433_110--Hb_001221_570 Hb_000252_110 Hb_000252_110 Hb_001433_110--Hb_000252_110 Hb_028487_170 Hb_028487_170 Hb_001433_110--Hb_028487_170 Hb_147752_010--Hb_001240_020 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_000928_130 Hb_000928_130 Hb_147752_010--Hb_000928_130 Hb_000110_170 Hb_000110_170 Hb_147752_010--Hb_000110_170 Hb_147752_010--Hb_007441_260 Hb_000445_490 Hb_000445_490 Hb_147752_010--Hb_000445_490 Hb_170426_010 Hb_170426_010 Hb_004679_060--Hb_170426_010 Hb_001449_100 Hb_001449_100 Hb_004679_060--Hb_001449_100 Hb_004679_060--Hb_007313_080 Hb_000189_540 Hb_000189_540 Hb_004679_060--Hb_000189_540 Hb_020805_060 Hb_020805_060 Hb_004679_060--Hb_020805_060 Hb_004787_040 Hb_004787_040 Hb_004679_060--Hb_004787_040 Hb_000768_130 Hb_000768_130 Hb_007313_080--Hb_000768_130 Hb_003020_330 Hb_003020_330 Hb_007313_080--Hb_003020_330 Hb_000454_180 Hb_000454_180 Hb_007313_080--Hb_000454_180 Hb_002900_130 Hb_002900_130 Hb_007313_080--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_007313_080--Hb_154141_030 Hb_027472_160 Hb_027472_160 Hb_007313_080--Hb_027472_160 Hb_007441_240 Hb_007441_240 Hb_000270_740--Hb_007441_240 Hb_000270_740--Hb_004787_040 Hb_000739_140 Hb_000739_140 Hb_000270_740--Hb_000739_140 Hb_000270_740--Hb_000768_130 Hb_158104_020 Hb_158104_020 Hb_000270_740--Hb_158104_020 Hb_000382_020 Hb_000382_020 Hb_000270_740--Hb_000382_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0796486 0.425823 0.930401 0.772797 0.00996726 0.0196381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93651 3.39015 0.973438 1.56947 0.723119

CAGE analysis