Hb_001059_160

Information

Type -
Description -
Location Contig1059: 169851-172889
Sequence    

Annotation

kegg
ID brp:103871888
description sugar transport protein 1-like
nr
ID CAN87006.1
description hexose transporter 1 [Hevea brasiliensis]
swissprot
ID Q41144
description Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1
trembl
ID B7FCC1
description Hexose transporter 1 OS=Hevea brasiliensis GN=hxt1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description sugar carrier protein c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01950: 169891-172974 , PASA_asmbl_01952: 170536-171371
cDNA
(Sanger)
(ID:Location)		 007_O10.ab1: 169894-171612 , 045_B17.ab1: 169894-171568

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_160 0.0 - - hexose transporter 1 [Hevea brasiliensis]
2 Hb_000796_010 0.1449302165 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
3 Hb_002234_060 0.1579059233 - - F-box protein, atfbl3, putative [Ricinus communis]
4 Hb_001059_170 0.1589161478 - - hexose transporter 1 [Hevea brasiliensis]
5 Hb_000258_330 0.1593624086 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_000331_460 0.1654566747 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
7 Hb_004225_080 0.1727887453 - - -
8 Hb_001114_080 0.1804503076 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
9 Hb_001059_150 0.1830165015 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
10 Hb_004346_030 0.1915538966 - - sucrose phosphate phosphatase, putative [Ricinus communis]
11 Hb_001004_150 0.1919682983 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
12 Hb_000025_210 0.1924712105 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
13 Hb_002183_070 0.1941716426 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
14 Hb_000032_440 0.1974256239 - - protein with unknown function [Ricinus communis]
15 Hb_000174_030 0.1998022033 - - hypothetical protein RCOM_1077370 [Ricinus communis]
16 Hb_000049_110 0.2019598666 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
17 Hb_001153_120 0.2024764821 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
18 Hb_000525_050 0.2068940691 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007831_020 0.2072791369 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001545_100 0.2080665254 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]

Gene co-expression network

sample Hb_001059_160 Hb_001059_160 Hb_000796_010 Hb_000796_010 Hb_001059_160--Hb_000796_010 Hb_002234_060 Hb_002234_060 Hb_001059_160--Hb_002234_060 Hb_001059_170 Hb_001059_170 Hb_001059_160--Hb_001059_170 Hb_000258_330 Hb_000258_330 Hb_001059_160--Hb_000258_330 Hb_000331_460 Hb_000331_460 Hb_001059_160--Hb_000331_460 Hb_004225_080 Hb_004225_080 Hb_001059_160--Hb_004225_080 Hb_001114_080 Hb_001114_080 Hb_000796_010--Hb_001114_080 Hb_001019_100 Hb_001019_100 Hb_000796_010--Hb_001019_100 Hb_003126_130 Hb_003126_130 Hb_000796_010--Hb_003126_130 Hb_007425_010 Hb_007425_010 Hb_000796_010--Hb_007425_010 Hb_066720_010 Hb_066720_010 Hb_000796_010--Hb_066720_010 Hb_181729_010 Hb_181729_010 Hb_002234_060--Hb_181729_010 Hb_000317_490 Hb_000317_490 Hb_002234_060--Hb_000317_490 Hb_002016_170 Hb_002016_170 Hb_002234_060--Hb_002016_170 Hb_000836_450 Hb_000836_450 Hb_002234_060--Hb_000836_450 Hb_000025_210 Hb_000025_210 Hb_002234_060--Hb_000025_210 Hb_004225_030 Hb_004225_030 Hb_002234_060--Hb_004225_030 Hb_002260_030 Hb_002260_030 Hb_001059_170--Hb_002260_030 Hb_001357_120 Hb_001357_120 Hb_001059_170--Hb_001357_120 Hb_002918_050 Hb_002918_050 Hb_001059_170--Hb_002918_050 Hb_000679_220 Hb_000679_220 Hb_001059_170--Hb_000679_220 Hb_001059_150 Hb_001059_150 Hb_001059_170--Hb_001059_150 Hb_000258_330--Hb_004225_080 Hb_000046_100 Hb_000046_100 Hb_000258_330--Hb_000046_100 Hb_003582_040 Hb_003582_040 Hb_000258_330--Hb_003582_040 Hb_001080_280 Hb_001080_280 Hb_000258_330--Hb_001080_280 Hb_009510_020 Hb_009510_020 Hb_000258_330--Hb_009510_020 Hb_001279_340 Hb_001279_340 Hb_000258_330--Hb_001279_340 Hb_002284_310 Hb_002284_310 Hb_000331_460--Hb_002284_310 Hb_001004_150 Hb_001004_150 Hb_000331_460--Hb_001004_150 Hb_000032_440 Hb_000032_440 Hb_000331_460--Hb_000032_440 Hb_001545_100 Hb_001545_100 Hb_000331_460--Hb_001545_100 Hb_000603_230 Hb_000603_230 Hb_000331_460--Hb_000603_230 Hb_000331_460--Hb_004225_080 Hb_004225_080--Hb_001545_100 Hb_000140_050 Hb_000140_050 Hb_004225_080--Hb_000140_050 Hb_003540_030 Hb_003540_030 Hb_004225_080--Hb_003540_030 Hb_002871_190 Hb_002871_190 Hb_004225_080--Hb_002871_190 Hb_010883_050 Hb_010883_050 Hb_004225_080--Hb_010883_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7325 2.99451 42.3686 18.2995 2.75205 4.21205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.9093 17.4482 55.1537 15.5307 21.8856

CAGE analysis