Hb_001060_110

Information

Type -
Description -
Location Contig1060: 121780-126408
Sequence    

Annotation

kegg
ID rcu:RCOM_0513180
description serine/threonine-protein kinase cx32, putative (EC:2.7.10.2)
nr
ID XP_002527153.1
description serine/threonine-protein kinase cx32, putative [Ricinus communis]
swissprot
ID P27450
description Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2
trembl
ID B9SMD4
description Serine/threonine-protein kinase cx32, putative OS=Ricinus communis GN=RCOM_0513180 PE=3 SV=1
Gene Ontology
ID GO:0005886
description probable serine threonine-protein kinase nak

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01982: 121774-126236
cDNA
(Sanger)
(ID:Location)		 001_P03.ab1: 121777-123104 , 003_E24.ab1: 121777-123140

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001060_110 0.0 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
2 Hb_001277_270 0.1164122169 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
3 Hb_012395_220 0.1313432571 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
4 Hb_002813_050 0.143781908 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
5 Hb_001621_150 0.144351668 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
6 Hb_000261_490 0.1451522632 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
7 Hb_003321_010 0.1540776252 - - hypothetical protein RCOM_0884420 [Ricinus communis]
8 Hb_003106_040 0.1545690165 - - lipase, putative [Ricinus communis]
9 Hb_000856_190 0.1551332514 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
10 Hb_000680_050 0.1594965803 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
11 Hb_006573_200 0.1595159123 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
12 Hb_005843_100 0.1600201249 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
13 Hb_000175_450 0.1606612197 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
14 Hb_004204_170 0.1611739057 - - synaptosomal associated protein, putative [Ricinus communis]
15 Hb_001141_390 0.1612710912 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
16 Hb_000085_100 0.1642712255 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
17 Hb_002374_310 0.1648002153 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
18 Hb_000084_030 0.165723064 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000859_060 0.1659906394 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
20 Hb_000500_040 0.1673521039 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001060_110 Hb_001060_110 Hb_001277_270 Hb_001277_270 Hb_001060_110--Hb_001277_270 Hb_012395_220 Hb_012395_220 Hb_001060_110--Hb_012395_220 Hb_002813_050 Hb_002813_050 Hb_001060_110--Hb_002813_050 Hb_001621_150 Hb_001621_150 Hb_001060_110--Hb_001621_150 Hb_000261_490 Hb_000261_490 Hb_001060_110--Hb_000261_490 Hb_003321_010 Hb_003321_010 Hb_001060_110--Hb_003321_010 Hb_000859_060 Hb_000859_060 Hb_001277_270--Hb_000859_060 Hb_126643_020 Hb_126643_020 Hb_001277_270--Hb_126643_020 Hb_004204_170 Hb_004204_170 Hb_001277_270--Hb_004204_170 Hb_001178_140 Hb_001178_140 Hb_001277_270--Hb_001178_140 Hb_000085_100 Hb_000085_100 Hb_001277_270--Hb_000085_100 Hb_002085_110 Hb_002085_110 Hb_001277_270--Hb_002085_110 Hb_012807_050 Hb_012807_050 Hb_012395_220--Hb_012807_050 Hb_012395_220--Hb_002813_050 Hb_000680_050 Hb_000680_050 Hb_012395_220--Hb_000680_050 Hb_010172_090 Hb_010172_090 Hb_012395_220--Hb_010172_090 Hb_000500_040 Hb_000500_040 Hb_012395_220--Hb_000500_040 Hb_001141_390 Hb_001141_390 Hb_012395_220--Hb_001141_390 Hb_000000_370 Hb_000000_370 Hb_002813_050--Hb_000000_370 Hb_002813_050--Hb_000859_060 Hb_004785_060 Hb_004785_060 Hb_002813_050--Hb_004785_060 Hb_002813_050--Hb_001141_390 Hb_002813_050--Hb_012807_050 Hb_005016_160 Hb_005016_160 Hb_001621_150--Hb_005016_160 Hb_002374_310 Hb_002374_310 Hb_001621_150--Hb_002374_310 Hb_000732_140 Hb_000732_140 Hb_001621_150--Hb_000732_140 Hb_000567_210 Hb_000567_210 Hb_001621_150--Hb_000567_210 Hb_001021_170 Hb_001021_170 Hb_001621_150--Hb_001021_170 Hb_001621_150--Hb_004785_060 Hb_000042_030 Hb_000042_030 Hb_000261_490--Hb_000042_030 Hb_000078_180 Hb_000078_180 Hb_000261_490--Hb_000078_180 Hb_001318_030 Hb_001318_030 Hb_000261_490--Hb_001318_030 Hb_000457_170 Hb_000457_170 Hb_000261_490--Hb_000457_170 Hb_003929_260 Hb_003929_260 Hb_000261_490--Hb_003929_260 Hb_005843_100 Hb_005843_100 Hb_000261_490--Hb_005843_100 Hb_003321_010--Hb_001277_270 Hb_000856_190 Hb_000856_190 Hb_003321_010--Hb_000856_190 Hb_004324_300 Hb_004324_300 Hb_003321_010--Hb_004324_300 Hb_003321_010--Hb_004204_170 Hb_000983_090 Hb_000983_090 Hb_003321_010--Hb_000983_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.8161 61.3127 17.3671 14.7988 20.2779 29.6108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4188 28.7449 64.7922 10.304 4.15798

CAGE analysis