Hb_001065_070

Information

Type -
Description -
Location Contig1065: 94894-98477
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02036: 89485-94960 , PASA_asmbl_02037: 90339-95083 , PASA_asmbl_02038: 98335-98982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001065_070 0.0 - - -
2 Hb_004976_070 0.1766118101 - - eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis]
3 Hb_002248_030 0.1836036401 - - metallothionein-like protein [Hevea brasiliensis]
4 Hb_000866_240 0.18480393 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
5 Hb_000676_140 0.188693107 - - structural constituent of ribosome, putative [Ricinus communis]
6 Hb_062226_140 0.1987217236 - - PREDICTED: protein NEDD1 [Jatropha curcas]
7 Hb_069150_010 0.2020477284 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
8 Hb_002805_220 0.2038893768 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
9 Hb_001221_560 0.2066590135 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
10 Hb_000731_170 0.2078970201 - - PREDICTED: phospholipase A I [Jatropha curcas]
11 Hb_002170_040 0.2084433217 - - conserved hypothetical protein [Ricinus communis]
12 Hb_075265_010 0.2090604165 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_003206_120 0.2111259784 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
14 Hb_001741_120 0.2118190924 - - hypothetical protein CARUB_v10011543mg, partial [Capsella rubella]
15 Hb_000011_570 0.2143998509 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
16 Hb_011909_140 0.2148224145 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
17 Hb_001894_050 0.2148325966 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
18 Hb_001511_150 0.2151772103 - - monovalent cation:proton antiporter, putative [Ricinus communis]
19 Hb_000175_100 0.2152263652 - - protein kinase, putative [Ricinus communis]
20 Hb_002301_180 0.2160654587 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]

Gene co-expression network

sample Hb_001065_070 Hb_001065_070 Hb_004976_070 Hb_004976_070 Hb_001065_070--Hb_004976_070 Hb_002248_030 Hb_002248_030 Hb_001065_070--Hb_002248_030 Hb_000866_240 Hb_000866_240 Hb_001065_070--Hb_000866_240 Hb_000676_140 Hb_000676_140 Hb_001065_070--Hb_000676_140 Hb_062226_140 Hb_062226_140 Hb_001065_070--Hb_062226_140 Hb_069150_010 Hb_069150_010 Hb_001065_070--Hb_069150_010 Hb_002805_220 Hb_002805_220 Hb_004976_070--Hb_002805_220 Hb_004976_070--Hb_000676_140 Hb_002170_040 Hb_002170_040 Hb_004976_070--Hb_002170_040 Hb_000847_060 Hb_000847_060 Hb_004976_070--Hb_000847_060 Hb_000167_060 Hb_000167_060 Hb_004976_070--Hb_000167_060 Hb_000028_100 Hb_000028_100 Hb_004976_070--Hb_000028_100 Hb_027472_140 Hb_027472_140 Hb_002248_030--Hb_027472_140 Hb_005288_170 Hb_005288_170 Hb_002248_030--Hb_005288_170 Hb_005928_040 Hb_005928_040 Hb_002248_030--Hb_005928_040 Hb_004324_110 Hb_004324_110 Hb_002248_030--Hb_004324_110 Hb_000672_030 Hb_000672_030 Hb_002248_030--Hb_000672_030 Hb_004916_020 Hb_004916_020 Hb_002248_030--Hb_004916_020 Hb_001863_430 Hb_001863_430 Hb_000866_240--Hb_001863_430 Hb_009476_020 Hb_009476_020 Hb_000866_240--Hb_009476_020 Hb_000155_160 Hb_000155_160 Hb_000866_240--Hb_000155_160 Hb_000035_370 Hb_000035_370 Hb_000866_240--Hb_000035_370 Hb_000866_240--Hb_000676_140 Hb_000506_070 Hb_000506_070 Hb_000866_240--Hb_000506_070 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_004709_010 Hb_004709_010 Hb_000676_140--Hb_004709_010 Hb_014720_040 Hb_014720_040 Hb_000676_140--Hb_014720_040 Hb_001016_150 Hb_001016_150 Hb_000676_140--Hb_001016_150 Hb_000676_140--Hb_001863_430 Hb_000342_100 Hb_000342_100 Hb_062226_140--Hb_000342_100 Hb_000207_400 Hb_000207_400 Hb_062226_140--Hb_000207_400 Hb_000331_470 Hb_000331_470 Hb_062226_140--Hb_000331_470 Hb_005391_040 Hb_005391_040 Hb_062226_140--Hb_005391_040 Hb_000465_390 Hb_000465_390 Hb_062226_140--Hb_000465_390 Hb_000111_380 Hb_000111_380 Hb_062226_140--Hb_000111_380 Hb_006478_040 Hb_006478_040 Hb_069150_010--Hb_006478_040 Hb_002713_010 Hb_002713_010 Hb_069150_010--Hb_002713_010 Hb_000072_170 Hb_000072_170 Hb_069150_010--Hb_000072_170 Hb_002994_030 Hb_002994_030 Hb_069150_010--Hb_002994_030 Hb_000739_300 Hb_000739_300 Hb_069150_010--Hb_000739_300 Hb_000000_230 Hb_000000_230 Hb_069150_010--Hb_000000_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.512825 3.68121 1.53883 1.67468 0.909972 2.32365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.20985 5.10168 0.122177 1.65938 1.48875

CAGE analysis