Hb_001066_010

Information

Type -
Description -
Location Contig1066: 72738-75537
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001066_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000622_320 0.273358082 - - PREDICTED: chitinase 1-like [Vitis vinifera]
3 Hb_017214_050 0.2925005803 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_002027_370 0.2927389029 - - conserved hypothetical protein [Ricinus communis]
5 Hb_074683_010 0.2961830095 - - -
6 Hb_015836_010 0.302249188 - - -
7 Hb_001994_010 0.321650002 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_005389_130 0.3415916278 - - hypothetical protein CICLE_v10009852mg [Citrus clementina]
9 Hb_113733_010 0.3682621304 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
10 Hb_029142_080 0.3833489052 - - Ankyrin repeat family protein, putative [Theobroma cacao]
11 Hb_013394_020 0.3949166681 - - PREDICTED: putative laccase-9 [Vitis vinifera]
12 Hb_000892_020 0.3950436662 - - unnamed protein product [Vitis vinifera]
13 Hb_000009_540 0.3961600952 - - hypothetical protein JCGZ_12303 [Jatropha curcas]
14 Hb_000718_050 0.4028209837 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
15 Hb_033594_010 0.4062104765 - - -
16 Hb_001591_010 0.4081989965 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
17 Hb_185111_010 0.4086757525 - - -
18 Hb_001894_080 0.4091623638 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000318_090 0.4122010143 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
20 Hb_002759_090 0.4139899456 - - -

Gene co-expression network

sample Hb_001066_010 Hb_001066_010 Hb_000622_320 Hb_000622_320 Hb_001066_010--Hb_000622_320 Hb_017214_050 Hb_017214_050 Hb_001066_010--Hb_017214_050 Hb_002027_370 Hb_002027_370 Hb_001066_010--Hb_002027_370 Hb_074683_010 Hb_074683_010 Hb_001066_010--Hb_074683_010 Hb_015836_010 Hb_015836_010 Hb_001066_010--Hb_015836_010 Hb_001994_010 Hb_001994_010 Hb_001066_010--Hb_001994_010 Hb_029142_080 Hb_029142_080 Hb_000622_320--Hb_029142_080 Hb_000164_060 Hb_000164_060 Hb_000622_320--Hb_000164_060 Hb_024650_040 Hb_024650_040 Hb_000622_320--Hb_024650_040 Hb_002890_080 Hb_002890_080 Hb_000622_320--Hb_002890_080 Hb_000892_020 Hb_000892_020 Hb_000622_320--Hb_000892_020 Hb_017214_050--Hb_002027_370 Hb_017214_050--Hb_074683_010 Hb_017214_050--Hb_001994_010 Hb_017214_050--Hb_015836_010 Hb_005389_130 Hb_005389_130 Hb_017214_050--Hb_005389_130 Hb_002027_370--Hb_074683_010 Hb_002027_370--Hb_001994_010 Hb_002027_370--Hb_015836_010 Hb_002027_370--Hb_005389_130 Hb_074683_010--Hb_001994_010 Hb_074683_010--Hb_015836_010 Hb_074683_010--Hb_005389_130 Hb_033594_010 Hb_033594_010 Hb_074683_010--Hb_033594_010 Hb_015836_010--Hb_005389_130 Hb_015836_010--Hb_001994_010 Hb_106496_010 Hb_106496_010 Hb_015836_010--Hb_106496_010 Hb_001994_010--Hb_005389_130 Hb_001994_010--Hb_033594_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00969485 0 0 0.0054851 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.013982 0 0.00555249 0

CAGE analysis